Wall clock time and date at job start Sun Mar 29 2020 21:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86796 * 119.99767 * 2 1 4 4 H 1.48499 * 109.47177 * 239.99924 * 3 2 1 5 5 H 1.48499 * 109.47621 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47200 * 120.00609 * 3 2 1 7 7 C 1.39069 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99726 * 199.82713 * 7 2 1 9 9 N 1.36823 * 120.00331 * 19.82313 * 7 2 1 10 10 C 1.34779 * 119.99702 * 42.76879 * 9 7 2 11 11 O 1.21664 * 120.00088 * 359.97438 * 10 9 7 12 12 C 1.46948 * 120.00185 * 180.02562 * 10 9 7 13 13 C 1.33119 * 120.00126 * 179.97438 * 12 10 9 14 14 C 1.51581 * 135.77966 * 180.02562 * 13 12 10 15 15 C 1.53846 * 86.75368 * 205.17347 * 14 13 12 16 16 C 1.51580 * 135.78502 * 0.02817 * 13 12 10 17 17 C 1.46496 * 120.00394 * 222.76988 * 9 7 2 18 18 C 1.53004 * 117.49821 * 3.21340 * 17 9 7 19 19 C 1.53000 * 117.49763 * 294.55538 * 17 9 7 20 20 H 0.96997 * 119.99923 * 354.92917 * 1 2 3 21 21 H 1.08003 * 119.99541 * 0.02562 * 12 10 9 22 22 H 1.09005 * 113.66936 * 90.70901 * 14 13 12 23 23 H 1.08997 * 113.66723 * 319.63756 * 14 13 12 24 24 H 1.08994 * 113.65794 * 89.68993 * 15 14 13 25 25 H 1.09004 * 113.65325 * 220.72975 * 15 14 13 26 26 H 1.09005 * 113.66210 * 40.35782 * 16 13 12 27 27 H 1.09001 * 113.66860 * 269.29426 * 16 13 12 28 28 H 1.08994 * 115.55148 * 148.88135 * 17 9 7 29 29 H 1.09000 * 117.49480 * 0.02562 * 18 17 9 30 30 H 1.08996 * 117.49771 * 145.01666 * 18 17 9 31 31 H 1.08996 * 117.50146 * 214.97956 * 19 17 9 32 32 H 1.09000 * 117.49578 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.1012 1.6964 -1.2125 5 1 1.2825 2.7465 0.0006 6 1 3.1013 1.6964 1.2124 7 6 2.0088 -1.2044 -0.0005 8 1 3.0408 -1.2322 0.3167 9 7 1.3856 -2.3540 -0.4029 10 6 0.5913 -2.3444 -1.4917 11 8 0.4282 -1.3132 -2.1165 12 6 -0.0786 -3.5789 -1.9236 13 6 -0.8635 -3.5692 -2.9987 14 6 -1.7009 -4.5912 -3.7416 15 6 -1.5254 -3.7021 -4.9848 16 6 -1.3071 -2.5315 -4.0106 17 6 1.5815 -3.5955 0.3498 18 6 2.4336 -3.5254 1.6187 19 6 2.9868 -4.2004 0.3611 20 1 -0.4850 0.8367 0.0742 21 1 0.0653 -4.4939 -1.3682 22 1 -2.7307 -4.6524 -3.3894 23 1 -1.2234 -5.5669 -3.8305 24 1 -0.6445 -3.9483 -5.5777 25 1 -2.4296 -3.6077 -5.5862 26 1 -0.5126 -1.8504 -4.3158 27 1 -2.2263 -2.0153 -3.7338 28 1 0.7370 -4.2845 0.3482 29 1 2.8480 -2.5554 1.8936 30 1 2.1498 -4.1685 2.4516 31 1 3.0668 -5.2874 0.3673 32 1 3.7654 -3.6749 -0.1918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755236587.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:02 Heat of formation + Delta-G solvation = 27.045312 kcal Electronic energy + Delta-G solvation = -15124.782418 eV Core-core repulsion = 12666.320420 eV Total energy + Delta-G solvation = -2458.461998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49627 -39.17858 -37.56461 -34.78691 -32.93149 -31.34242 -27.17687 -26.60830 -24.07968 -23.09395 -22.74258 -21.41784 -19.01022 -18.07588 -17.77606 -16.83961 -16.26799 -16.17924 -15.58411 -15.14163 -14.91102 -14.57212 -13.69790 -13.29556 -13.11959 -12.93697 -12.80319 -12.55872 -12.40362 -12.23416 -12.10425 -11.75047 -11.65537 -11.29763 -11.20086 -10.71568 -9.88055 -9.84809 -8.96131 -8.20995 -5.95561 0.76575 1.33683 1.42963 1.46072 2.30236 2.82324 3.07403 3.12385 3.48213 3.66830 3.69720 3.93130 4.10815 4.27985 4.33319 4.38918 4.50009 4.75249 4.79944 4.88643 4.94539 5.03451 5.04169 5.12231 5.26971 5.42002 5.43800 5.45694 5.49870 5.90286 6.21522 7.03131 7.26520 7.71605 8.41698 8.87450 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024365 B = 0.010863 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.895140 B = 2576.985853 C = 3492.098604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.022 3.978 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.361 4.361 8 H 0.078 0.922 9 N -0.439 5.439 10 C 0.490 3.510 11 O -0.587 6.587 12 C -0.192 4.192 13 C -0.108 4.108 14 C -0.085 4.085 15 C -0.122 4.122 16 C -0.114 4.114 17 C 0.043 3.957 18 C -0.170 4.170 19 C -0.180 4.180 20 H 0.259 0.741 21 H 0.145 0.855 22 H 0.112 0.888 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -11.209 -2.990 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.185 4.185 3 Si 0.796 3.204 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.488 4.488 8 H 0.096 0.904 9 N -0.158 5.158 10 C 0.282 3.718 11 O -0.471 6.471 12 C -0.213 4.213 13 C -0.110 4.110 14 C -0.121 4.121 15 C -0.159 4.159 16 C -0.151 4.151 17 C -0.062 4.062 18 C -0.208 4.208 19 C -0.218 4.218 20 H 0.068 0.932 21 H 0.162 0.838 22 H 0.130 0.870 23 H 0.115 0.885 24 H 0.104 0.896 25 H 0.115 0.885 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.143 0.857 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.298 -10.558 -3.339 11.149 hybrid contribution 0.447 1.378 0.292 1.478 sum -0.851 -9.179 -3.047 9.709 Atomic orbital electron populations 1.69934 1.08171 1.27656 1.44429 1.26078 0.95470 1.02660 0.94298 0.85365 0.78175 0.78080 0.78798 1.20886 1.21202 1.17822 1.19073 0.95556 0.85782 1.48423 0.90405 1.42897 1.43705 1.07155 1.22079 1.18741 0.83088 0.88813 0.81161 1.90540 1.64599 1.35411 1.56535 1.22008 1.03036 0.97929 0.98311 1.23934 0.94382 1.00223 0.92456 1.22326 0.99606 0.96884 0.93296 1.22777 1.03146 0.94323 0.95675 1.22252 1.00347 0.96832 0.95700 1.22021 0.95010 0.90154 0.99051 1.23144 1.03534 1.02274 0.91836 1.23333 0.96674 1.00732 1.01094 0.93172 0.83794 0.86971 0.88465 0.89638 0.88464 0.93669 0.89898 0.85745 0.90143 0.86256 0.85549 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.84 11.71 21.68 0.25 -54.58 16 2 C 0.02 1.28 4.32 84.96 0.37 1.65 16 3 Si 0.97 47.38 29.60 68.60 2.03 49.41 16 4 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.25 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.36 -20.83 7.98 84.11 0.67 -20.16 16 8 H 0.08 4.32 7.19 -2.91 -0.02 4.30 16 9 N -0.44 -23.38 2.84 -617.36 -1.75 -25.13 16 10 C 0.49 27.05 6.92 86.52 0.60 27.65 16 11 O -0.59 -37.39 12.77 -4.23 -0.05 -37.44 16 12 C -0.19 -8.20 9.29 23.40 0.22 -7.98 16 13 C -0.11 -4.01 6.88 -17.09 -0.12 -4.13 16 14 C -0.08 -2.06 8.05 30.41 0.24 -1.82 16 15 C -0.12 -3.04 8.11 31.11 0.25 -2.79 16 16 C -0.11 -4.24 7.06 30.42 0.21 -4.02 16 17 C 0.04 1.72 5.75 44.99 0.26 1.98 16 18 C -0.17 -6.02 9.80 30.62 0.30 -5.72 16 19 C -0.18 -5.92 10.36 30.62 0.32 -5.60 16 20 H 0.26 15.77 8.31 -92.71 -0.77 14.99 16 21 H 0.14 5.05 6.30 -2.91 -0.02 5.03 16 22 H 0.11 2.33 8.14 -2.38 -0.02 2.32 16 23 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.04 1.99 7.48 -2.38 -0.02 1.97 16 27 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.13 4.42 6.57 -2.39 -0.02 4.40 16 29 H 0.08 3.28 6.69 -2.39 -0.02 3.26 16 30 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 31 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -76.38 270.45 4.91 -71.47 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.11 Total: 17.22 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 3.33 Total: -20.94 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -1.50 Total: -79.72 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.05 Total: -37.44 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -76.38 4.91 -71.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755236587.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.518 kcal (2) G-P(sol) polarization free energy of solvation -76.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds