Wall clock time and date at job start Sun Mar 29 2020 21:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47086 * 282.28446 * 3 2 1 5 5 C 1.52998 * 109.47043 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46926 * 180.02562 * 5 4 3 7 7 O 1.21296 * 120.00378 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00220 * 180.02562 * 6 5 4 9 9 C 1.37091 * 120.00258 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99851 * 223.14437 * 9 8 6 11 11 C 1.38942 * 120.00442 * 43.14424 * 9 8 6 12 12 N 1.31414 * 119.99922 * 23.03069 * 11 9 8 13 13 Si 1.86797 * 120.00158 * 203.03508 * 11 9 8 14 14 H 1.48503 * 109.47191 * 179.97438 * 13 11 9 15 15 H 1.48499 * 109.47172 * 299.99685 * 13 11 9 16 16 H 1.48496 * 109.47259 * 59.99704 * 13 11 9 17 17 C 1.46508 * 119.99384 * 359.97438 * 8 6 5 18 18 C 1.53002 * 117.49453 * 188.26312 * 17 8 6 19 19 C 1.53004 * 60.00148 * 252.51359 * 18 17 8 20 20 H 4.44650 * 5.63305 * 180.02562 * 4 1 2 21 21 H 1.09005 * 109.46689 * 162.28802 * 3 2 1 22 22 H 1.08992 * 109.47218 * 42.28987 * 3 2 1 23 23 H 1.08997 * 109.47234 * 60.00242 * 4 3 2 24 24 H 1.09006 * 109.47599 * 300.00595 * 4 3 2 25 25 H 1.08997 * 109.47051 * 60.00927 * 5 4 3 26 26 H 1.08991 * 109.47544 * 300.00140 * 5 4 3 27 27 H 0.96999 * 120.00137 * 6.14243 * 12 11 9 28 28 H 1.08999 * 115.55190 * 333.97275 * 17 8 6 29 29 H 1.08996 * 117.49764 * 0.02562 * 18 17 8 30 30 H 1.08999 * 117.49659 * 145.02224 * 18 17 8 31 31 H 1.08998 * 117.50051 * 252.51877 * 19 18 17 32 32 H 1.09000 * 117.51908 * 107.48332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.3060 1.4095 5 6 4.6861 -0.3047 1.4096 6 6 5.1885 -0.6074 2.7978 7 8 4.4004 -0.8053 3.6984 8 7 6.5137 -0.6583 3.0387 9 6 6.9707 -0.9342 4.3014 10 1 7.7933 -0.3685 4.7135 11 6 6.3758 -1.9415 5.0510 12 7 5.7198 -2.9082 4.4492 13 14 6.5084 -1.9216 6.9142 14 1 5.7934 -3.0967 7.4739 15 1 7.9388 -1.9777 7.3093 16 1 5.8980 -0.6745 7.4406 17 6 7.4656 -0.4199 1.9508 18 6 8.9457 -0.6803 2.2376 19 6 8.4334 0.7552 2.1039 20 1 -1.0500 -0.0002 0.0000 21 1 3.0088 0.9798 -0.3127 22 1 3.0097 -0.7593 -0.6914 23 1 2.7933 -1.2851 1.7222 24 1 2.7924 0.4540 2.1010 25 1 5.0486 0.6746 1.0972 26 1 5.0502 -1.0645 0.7181 27 1 5.7255 -2.9688 3.4812 28 1 7.0998 -0.6435 0.9486 29 1 9.2112 -1.0293 3.2355 30 1 9.5541 -1.0754 1.4241 31 1 8.7046 1.3045 1.2023 32 1 8.3616 1.3511 3.0137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758153192.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:52 Heat of formation + Delta-G solvation = 38.916555 kcal Electronic energy + Delta-G solvation = -14851.364557 eV Core-core repulsion = 12393.417334 eV Total energy + Delta-G solvation = -2457.947223 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.86788 -36.41527 -35.17698 -33.00084 -31.88078 -30.69405 -27.61891 -24.54703 -22.05827 -21.70012 -21.15819 -19.09359 -18.03665 -16.67734 -16.23178 -15.34364 -14.74493 -14.09861 -13.91359 -13.71096 -13.54384 -13.01601 -12.39863 -12.22388 -11.71641 -11.23078 -10.95630 -10.87997 -10.71648 -10.47091 -10.22917 -10.07276 -10.03423 -9.92011 -9.84434 -9.68095 -8.63935 -8.05300 -7.30427 -6.34642 -3.86168 2.94318 2.96392 3.43094 3.54227 3.68449 3.95505 4.32875 4.50958 4.67948 4.80432 5.26569 5.37199 5.45894 5.48090 5.52922 5.70152 5.73179 5.87822 5.89341 6.03337 6.07535 6.15609 6.19142 6.42663 6.56911 6.68776 6.74639 6.88355 7.74556 7.90952 8.42528 8.84460 9.22018 9.59296 10.13198 10.93508 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.008693 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.216721 B = 3220.185822 C = 4124.759181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.173 4.173 3 C -0.016 4.016 4 C -0.094 4.094 5 C -0.133 4.133 6 C 0.459 3.541 7 O -0.538 6.538 8 N -0.434 5.434 9 C -0.430 4.430 10 H 0.069 0.931 11 C 0.040 3.960 12 N -0.845 5.845 13 Si 1.075 2.925 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.286 1.286 17 C 0.068 3.932 18 C -0.175 4.175 19 C -0.203 4.203 20 H 0.215 0.785 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.270 0.730 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 5.078 -8.902 10.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.173 4.173 3 C -0.053 4.053 4 C -0.132 4.132 5 C -0.173 4.173 6 C 0.247 3.753 7 O -0.416 6.416 8 N -0.155 5.155 9 C -0.557 4.557 10 H 0.087 0.913 11 C -0.173 4.173 12 N -0.476 5.476 13 Si 0.902 3.098 14 H -0.207 1.207 15 H -0.216 1.216 16 H -0.212 1.212 17 C -0.038 4.038 18 C -0.213 4.213 19 C -0.242 4.242 20 H 0.231 0.769 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.216 4.172 -7.063 8.293 hybrid contribution 0.485 0.851 -1.619 1.892 sum -0.731 5.023 -8.682 10.057 Atomic orbital electron populations 1.24819 0.95917 1.01999 1.01663 1.23276 0.94704 0.99658 0.99708 1.18859 0.84523 1.02709 0.99165 1.21219 0.94269 1.03647 0.94087 1.21605 0.96093 1.02150 0.97476 1.20152 0.82974 0.82475 0.89660 1.90614 1.54101 1.50649 1.46262 1.43031 1.02494 1.62973 1.07007 1.19736 1.23588 1.21361 0.90981 0.91345 1.26145 0.93759 0.90625 1.06769 1.70563 1.36794 1.28079 1.12156 0.83444 0.75752 0.76519 0.74084 1.20709 1.21601 1.21220 1.21784 0.87931 1.01578 0.92502 1.23083 0.96452 0.98199 1.03535 1.23251 1.06604 0.91860 1.02456 0.76856 0.89776 0.89758 0.90983 0.91160 0.90483 0.90749 0.91995 0.87779 0.87432 0.89809 0.89763 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.00 19.25 29.55 0.57 -2.43 16 2 C -0.17 -2.55 13.34 -37.12 -0.50 -3.05 16 3 C -0.02 -0.22 5.70 -29.52 -0.17 -0.39 16 4 C -0.09 -1.65 4.46 -26.73 -0.12 -1.77 16 5 C -0.13 -2.43 4.26 -27.88 -0.12 -2.55 16 6 C 0.46 11.50 6.43 -10.98 -0.07 11.43 16 7 O -0.54 -15.92 13.81 5.54 0.08 -15.84 16 8 N -0.43 -10.83 2.61 -107.72 -0.28 -11.11 16 9 C -0.43 -11.94 7.74 -14.94 -0.12 -12.06 16 10 H 0.07 1.87 7.47 -52.48 -0.39 1.48 16 11 C 0.04 1.15 4.22 -17.47 -0.07 1.08 16 12 N -0.85 -25.98 12.33 55.50 0.68 -25.30 16 13 Si 1.07 26.01 29.98 -169.99 -5.10 20.91 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.07 1.34 5.99 -67.92 -0.41 0.94 16 18 C -0.17 -3.17 9.81 -26.73 -0.26 -3.43 16 19 C -0.20 -3.48 10.28 -26.73 -0.27 -3.76 16 20 H 0.21 1.99 7.80 -54.09 -0.42 1.57 16 21 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 24 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 25 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 26 H 0.07 1.23 7.57 -51.93 -0.39 0.83 16 27 H 0.27 8.34 7.41 -40.82 -0.30 8.04 16 28 H 0.10 1.77 6.81 -51.93 -0.35 1.42 16 29 H 0.11 2.21 6.85 -51.93 -0.36 1.85 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 LS Contribution 280.45 15.07 4.23 4.23 Total: -1.00 -33.79 280.45 -6.32 -40.10 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.39 Total: 2.99 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.54 Total: -15.98 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.40 Total: -36.41 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.08 Total: -15.84 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.10 Total: 20.91 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.79 -6.32 -40.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758153192.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.017 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds