Wall clock time and date at job start Sun Mar 29 2020 21:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17404 * 179.97438 * 2 1 4 4 C 1.43197 * 179.97438 * 72.61499 * 3 2 1 5 5 O 1.21619 * 119.99503 * 198.20180 * 4 3 2 6 6 N 1.34773 * 120.00814 * 18.20354 * 4 3 2 7 7 C 1.46493 * 120.00646 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47443 * 270.00265 * 7 6 4 9 9 H 1.08001 * 120.00056 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00480 * 179.97438 * 8 7 6 11 11 N 1.31505 * 120.00447 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99662 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46974 * 90.00094 * 12 10 8 14 14 H 1.48500 * 109.47191 * 210.00006 * 12 10 8 15 15 H 1.48501 * 109.47289 * 330.00624 * 12 10 8 16 16 C 1.46505 * 119.99455 * 359.97438 * 6 4 3 17 17 C 1.52997 * 109.47212 * 90.00023 * 16 6 4 18 18 C 1.53000 * 117.50165 * 243.62151 * 17 16 6 19 19 C 1.52994 * 59.99907 * 252.50793 * 18 17 16 20 20 H 1.09008 * 109.46908 * 89.18374 * 1 2 3 21 21 H 1.08997 * 109.46764 * 209.17750 * 1 2 3 22 22 H 1.08997 * 109.47638 * 329.18354 * 1 2 3 23 23 H 1.09006 * 109.46911 * 30.00087 * 7 6 4 24 24 H 1.08996 * 109.47170 * 149.99599 * 7 6 4 25 25 H 0.97003 * 120.00287 * 179.97438 * 11 10 8 26 26 H 1.09002 * 109.47068 * 210.00083 * 16 6 4 27 27 H 1.09001 * 109.47372 * 330.00170 * 16 6 4 28 28 H 1.09003 * 115.54795 * 29.32516 * 17 16 6 29 29 H 1.09001 * 117.49810 * 359.97438 * 18 17 16 30 30 H 1.08995 * 117.50134 * 145.01745 * 18 17 16 31 31 H 1.09004 * 117.49933 * 252.50827 * 19 18 17 32 32 H 1.09002 * 117.49788 * 107.49222 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0010 -0.0006 5 8 4.6858 1.0018 0.3281 6 7 4.7522 -1.1075 -0.3655 7 6 6.2172 -1.1068 -0.3666 8 6 6.7183 -0.6630 -1.7167 9 1 6.0158 -0.4074 -2.4962 10 6 8.0736 -0.5832 -1.9570 11 7 8.5109 -0.1954 -3.1350 12 14 9.2887 -1.0246 -0.6086 13 1 9.6117 -2.4719 -0.6877 14 1 10.5312 -0.2299 -0.7823 15 1 8.6893 -0.7229 0.7161 16 6 4.0200 -2.3132 -0.7610 17 6 3.7638 -2.2826 -2.2691 18 6 2.3085 -2.2221 -2.7374 19 6 3.1113 -3.5143 -2.9000 20 1 -0.3633 0.0146 -1.0276 21 1 -0.3633 -0.8973 0.5010 22 1 -0.3634 0.8825 0.5264 23 1 6.5808 -0.4215 0.3991 24 1 6.5811 -2.1125 -0.1565 25 1 9.4645 -0.1389 -3.3040 26 1 4.6097 -3.1950 -0.5104 27 1 3.0680 -2.3503 -0.2315 28 1 4.5060 -1.7473 -2.8612 29 1 1.5335 -2.2044 -1.9711 30 1 2.0930 -1.6468 -3.6377 31 1 3.4240 -3.7891 -3.9073 32 1 2.8645 -4.3464 -2.2406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764498088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:11 Heat of formation + Delta-G solvation = 42.356821 kcal Electronic energy + Delta-G solvation = -14781.542906 eV Core-core repulsion = 12323.744864 eV Total energy + Delta-G solvation = -2457.798042 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22009 -37.05671 -34.51234 -33.98553 -32.44977 -29.31736 -28.04250 -26.32095 -23.30950 -22.10424 -20.68673 -20.17770 -17.56747 -16.82725 -15.77306 -15.18473 -14.87161 -14.50449 -13.97652 -13.80400 -13.61405 -13.32690 -13.14274 -12.56261 -12.23235 -11.69484 -11.42594 -11.27292 -11.02768 -10.57112 -10.18433 -10.11815 -10.01863 -9.96911 -9.71646 -9.47219 -9.31001 -8.58541 -7.81465 -6.07984 -4.06898 2.05797 2.65812 3.27807 3.36070 3.40334 3.63706 4.10094 4.11136 4.40308 4.51526 5.06590 5.18311 5.24842 5.32914 5.41943 5.44479 5.54833 5.61554 5.75339 5.84473 5.93654 5.98494 6.15783 6.34804 6.62806 6.81482 6.93899 7.25670 7.56399 7.60091 8.13399 8.45431 8.83567 8.95966 9.51547 11.05045 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028312 B = 0.008924 C = 0.007535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.730371 B = 3136.723837 C = 3714.875882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.126 4.126 3 C -0.193 4.193 4 C 0.620 3.380 5 O -0.524 6.524 6 N -0.578 5.578 7 C 0.216 3.784 8 C -0.528 4.528 9 H 0.078 0.922 10 C 0.073 3.927 11 N -0.896 5.896 12 Si 0.873 3.127 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.263 1.263 16 C 0.147 3.853 17 C -0.162 4.162 18 C -0.183 4.183 19 C -0.178 4.178 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.044 0.956 24 H 0.030 0.970 25 H 0.265 0.735 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 -6.497 4.332 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.128 4.128 3 C -0.196 4.196 4 C 0.407 3.593 5 O -0.402 6.402 6 N -0.308 5.308 7 C 0.096 3.904 8 C -0.566 4.566 9 H 0.096 0.904 10 C -0.129 4.129 11 N -0.535 5.535 12 Si 0.700 3.300 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.188 1.188 16 C 0.024 3.976 17 C -0.181 4.181 18 C -0.220 4.220 19 C -0.216 4.216 20 H 0.105 0.895 21 H 0.103 0.897 22 H 0.102 0.898 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.777 -5.945 4.415 15.641 hybrid contribution 0.725 -0.231 0.354 0.839 sum -13.052 -6.176 4.769 15.207 Atomic orbital electron populations 1.18977 0.84052 1.03353 1.03528 1.22490 0.93688 0.99853 0.96791 1.21178 0.92870 1.01803 1.03733 1.14788 0.82132 0.83746 0.78644 1.90823 1.68559 1.32229 1.48570 1.47767 1.08500 1.10882 1.63649 1.19780 0.74128 0.97348 0.99167 1.21322 0.92788 1.45710 0.96792 0.90427 1.24843 0.98105 0.94578 0.95399 1.69887 1.14574 1.47263 1.21748 0.86887 0.81276 0.78670 0.83187 1.20078 1.20925 1.18775 1.21032 0.96130 0.88078 0.92405 1.23019 0.96195 1.01785 0.97085 1.22972 0.94846 1.01116 1.03080 1.22871 1.04928 0.91695 1.02117 0.89518 0.89730 0.89834 0.93782 0.95192 0.92550 0.89965 0.91426 0.85538 0.89378 0.89301 0.88960 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.37 10.32 34.37 0.35 -0.02 16 2 C -0.13 -1.82 14.13 -37.12 -0.52 -2.34 16 3 C -0.19 -3.56 11.70 -38.84 -0.45 -4.01 16 4 C 0.62 14.01 7.53 -14.34 -0.11 13.90 16 5 O -0.52 -13.95 16.66 5.26 0.09 -13.87 16 6 N -0.58 -12.47 2.46 -177.95 -0.44 -12.91 16 7 C 0.22 5.31 4.27 -5.20 -0.02 5.28 16 8 C -0.53 -15.07 9.58 -34.44 -0.33 -15.40 16 9 H 0.08 2.42 6.90 -52.49 -0.36 2.05 16 10 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 11 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 12 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 16 C 0.15 2.50 5.54 -4.04 -0.02 2.48 16 17 C -0.16 -2.74 6.01 -90.62 -0.54 -3.28 16 18 C -0.18 -2.53 10.18 -26.73 -0.27 -2.81 16 19 C -0.18 -2.39 10.25 -26.74 -0.27 -2.66 16 20 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 21 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.04 1.16 6.48 -51.93 -0.34 0.82 16 24 H 0.03 0.68 7.32 -51.93 -0.38 0.30 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 27 H 0.07 1.00 6.62 -51.93 -0.34 0.65 16 28 H 0.13 2.67 6.57 -51.93 -0.34 2.33 16 29 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 283.26 15.07 4.27 4.27 Total: -1.00 -33.68 283.26 -6.57 -40.24 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.29 Total: -0.90 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -2.30 Total: -6.83 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.34 Total: -39.69 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.68 -6.57 -40.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764498088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.599 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds