Wall clock time and date at job start Sun Mar 29 2020 21:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17404 * 179.97438 * 2 1 4 4 C 1.43197 * 179.97438 * 72.61499 * 3 2 1 5 5 O 1.21619 * 119.99503 * 198.20180 * 4 3 2 6 6 N 1.34773 * 120.00814 * 18.20354 * 4 3 2 7 7 C 1.46493 * 120.00646 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47443 * 270.00265 * 7 6 4 9 9 H 1.08001 * 120.00056 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00480 * 179.97438 * 8 7 6 11 11 N 1.31505 * 120.00447 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99662 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46974 * 90.00094 * 12 10 8 14 14 H 1.48500 * 109.47191 * 210.00006 * 12 10 8 15 15 H 1.48501 * 109.47289 * 330.00624 * 12 10 8 16 16 C 1.46505 * 119.99455 * 359.97438 * 6 4 3 17 17 C 1.52997 * 109.47212 * 90.00023 * 16 6 4 18 18 C 1.53000 * 117.50165 * 243.62151 * 17 16 6 19 19 C 1.52994 * 59.99907 * 252.50793 * 18 17 16 20 20 H 1.09008 * 109.46908 * 89.18374 * 1 2 3 21 21 H 1.08997 * 109.46764 * 209.17750 * 1 2 3 22 22 H 1.08997 * 109.47638 * 329.18354 * 1 2 3 23 23 H 1.09006 * 109.46911 * 30.00087 * 7 6 4 24 24 H 1.08996 * 109.47170 * 149.99599 * 7 6 4 25 25 H 0.97003 * 120.00287 * 179.97438 * 11 10 8 26 26 H 1.09002 * 109.47068 * 210.00083 * 16 6 4 27 27 H 1.09001 * 109.47372 * 330.00170 * 16 6 4 28 28 H 1.09003 * 115.54795 * 29.32516 * 17 16 6 29 29 H 1.09001 * 117.49810 * 359.97438 * 18 17 16 30 30 H 1.08995 * 117.50134 * 145.01745 * 18 17 16 31 31 H 1.09004 * 117.49933 * 252.50827 * 19 18 17 32 32 H 1.09002 * 117.49788 * 107.49222 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0010 -0.0006 5 8 4.6858 1.0018 0.3281 6 7 4.7522 -1.1075 -0.3655 7 6 6.2172 -1.1068 -0.3666 8 6 6.7183 -0.6630 -1.7167 9 1 6.0158 -0.4074 -2.4962 10 6 8.0736 -0.5832 -1.9570 11 7 8.5109 -0.1954 -3.1350 12 14 9.2887 -1.0246 -0.6086 13 1 9.6117 -2.4719 -0.6877 14 1 10.5312 -0.2299 -0.7823 15 1 8.6893 -0.7229 0.7161 16 6 4.0200 -2.3132 -0.7610 17 6 3.7638 -2.2826 -2.2691 18 6 2.3085 -2.2221 -2.7374 19 6 3.1113 -3.5143 -2.9000 20 1 -0.3633 0.0146 -1.0276 21 1 -0.3633 -0.8973 0.5010 22 1 -0.3634 0.8825 0.5264 23 1 6.5808 -0.4215 0.3991 24 1 6.5811 -2.1125 -0.1565 25 1 9.4645 -0.1389 -3.3040 26 1 4.6097 -3.1950 -0.5104 27 1 3.0680 -2.3503 -0.2315 28 1 4.5060 -1.7473 -2.8612 29 1 1.5335 -2.2044 -1.9711 30 1 2.0930 -1.6468 -3.6377 31 1 3.4240 -3.7891 -3.9073 32 1 2.8645 -4.3464 -2.2406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764498088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:10 Heat of formation + Delta-G solvation = 19.923524 kcal Electronic energy + Delta-G solvation = -14782.515687 eV Core-core repulsion = 12323.744864 eV Total energy + Delta-G solvation = -2458.770822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88247 -38.42358 -36.23012 -35.20336 -34.54596 -30.92143 -29.38679 -27.80872 -25.18591 -23.19452 -22.32905 -21.60302 -19.25623 -18.87080 -17.53906 -16.58993 -16.49811 -15.75332 -15.72257 -14.99043 -14.86829 -14.40382 -14.38144 -14.29592 -13.90148 -13.57494 -13.03316 -12.78841 -12.42307 -12.31271 -12.02614 -11.72143 -11.48490 -11.25812 -11.19814 -11.07173 -10.82284 -10.72689 -9.58309 -8.33609 -6.38820 0.63783 1.31589 1.34820 1.40778 1.47556 2.14148 2.31348 2.62090 2.92145 3.00627 3.26241 3.85475 4.01711 4.13314 4.32100 4.41521 4.61564 4.68069 4.78756 4.82049 4.84444 4.86743 4.91804 5.03910 5.07638 5.29376 5.39623 5.42431 5.52356 6.21876 6.35699 6.48570 6.62236 7.10806 7.26959 8.83187 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028312 B = 0.008924 C = 0.007535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.730371 B = 3136.723837 C = 3714.875882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.050 4.050 3 C -0.279 4.279 4 C 0.614 3.386 5 O -0.588 6.588 6 N -0.582 5.582 7 C 0.223 3.777 8 C -0.533 4.533 9 H 0.031 0.969 10 C 0.011 3.989 11 N -0.945 5.945 12 Si 0.947 3.053 13 H -0.249 1.249 14 H -0.282 1.282 15 H -0.255 1.255 16 C 0.148 3.852 17 C -0.198 4.198 18 C -0.167 4.167 19 C -0.153 4.153 20 H 0.112 0.888 21 H 0.119 0.881 22 H 0.105 0.895 23 H 0.025 0.975 24 H 0.057 0.943 25 H 0.268 0.732 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.067 -8.645 5.823 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.053 4.053 3 C -0.282 4.282 4 C 0.404 3.596 5 O -0.471 6.471 6 N -0.311 5.311 7 C 0.102 3.898 8 C -0.571 4.571 9 H 0.049 0.951 10 C -0.187 4.187 11 N -0.585 5.585 12 Si 0.769 3.231 13 H -0.173 1.173 14 H -0.207 1.207 15 H -0.179 1.179 16 C 0.026 3.974 17 C -0.218 4.218 18 C -0.204 4.204 19 C -0.190 4.190 20 H 0.130 0.870 21 H 0.137 0.863 22 H 0.124 0.876 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.556 -8.143 5.892 19.369 hybrid contribution 1.362 0.469 -0.214 1.456 sum -15.194 -7.675 5.678 17.944 Atomic orbital electron populations 1.19527 0.79268 1.05971 1.05829 1.23664 0.94523 0.95245 0.91819 1.20485 0.92236 1.06772 1.08668 1.15331 0.84183 0.82884 0.77231 1.90752 1.70449 1.34285 1.51574 1.47824 1.07553 1.12452 1.63222 1.19489 0.76606 0.97797 0.95954 1.21506 0.92480 1.45560 0.97598 0.95103 1.25848 1.00317 0.94376 0.98130 1.70046 1.15270 1.48948 1.24275 0.85723 0.77988 0.79702 0.79665 1.17313 1.20709 1.17861 1.21296 0.97163 0.86390 0.92556 1.22707 0.97271 1.05160 0.96615 1.23071 0.93157 1.00948 1.03253 1.22991 1.02275 0.91570 1.02203 0.87023 0.86268 0.87648 0.95742 0.92508 0.92265 0.88592 0.88472 0.91260 0.86757 0.89693 0.89010 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.32 70.18 0.72 0.16 16 2 C -0.05 -1.28 14.13 31.12 0.44 -0.84 16 3 C -0.28 -10.16 11.70 30.01 0.35 -9.81 16 4 C 0.61 29.03 7.53 85.49 0.64 29.67 16 5 O -0.59 -33.45 16.66 -4.09 -0.07 -33.52 16 6 N -0.58 -25.99 2.46 -835.15 -2.05 -28.04 16 7 C 0.22 11.35 4.27 85.63 0.37 11.72 16 8 C -0.53 -32.27 9.58 25.60 0.25 -32.02 16 9 H 0.03 2.10 6.90 -2.91 -0.02 2.08 16 10 C 0.01 0.67 5.47 84.66 0.46 1.13 16 11 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 12 Si 0.95 45.06 27.47 68.60 1.88 46.94 16 13 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 15 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 16 C 0.15 4.91 5.54 86.38 0.48 5.39 16 17 C -0.20 -6.76 6.01 -10.80 -0.06 -6.83 16 18 C -0.17 -4.27 10.18 30.59 0.31 -3.96 16 19 C -0.15 -3.75 10.25 30.59 0.31 -3.43 16 20 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 21 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.02 1.34 6.48 -2.38 -0.02 1.32 16 24 H 0.06 2.57 7.32 -2.39 -0.02 2.55 16 25 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 26 H 0.10 2.84 7.89 -2.39 -0.02 2.82 16 27 H 0.10 2.62 6.62 -2.39 -0.02 2.60 16 28 H 0.07 3.19 6.57 -2.39 -0.02 3.17 16 29 H 0.11 2.30 8.03 -2.39 -0.02 2.28 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -81.83 283.26 5.39 -76.44 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.06 Total: 7.52 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 4.27 Total: -8.82 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -1.75 Total: -88.57 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.07 Total: -33.52 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -81.83 5.39 -76.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764498088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.364 kcal (2) G-P(sol) polarization free energy of solvation -81.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds