Wall clock time and date at job start Sun Mar 29 2020 21:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47055 * 106.82128 * 3 2 1 5 5 C 1.36936 * 120.00090 * 264.22349 * 4 3 2 6 6 H 1.08002 * 120.00443 * 196.86549 * 5 4 3 7 7 C 1.38814 * 119.99766 * 16.87750 * 5 4 3 8 8 N 1.31613 * 120.00108 * 22.13931 * 7 5 4 9 9 Si 1.86805 * 119.99701 * 202.14296 * 7 5 4 10 10 H 1.48499 * 109.46953 * 59.99691 * 9 7 5 11 11 H 1.48495 * 109.47129 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47233 * 299.99631 * 9 7 5 13 13 C 1.46505 * 119.99985 * 84.22761 * 4 3 2 14 14 C 1.52996 * 109.46968 * 269.99939 * 13 4 3 15 15 C 1.50697 * 109.47211 * 179.97438 * 14 13 4 16 16 O 1.20766 * 119.99868 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00356 * 179.97438 * 15 14 13 18 18 C 1.52992 * 117.50418 * 223.75121 * 17 15 14 19 19 C 1.52992 * 117.49832 * 155.08672 * 17 15 14 20 20 H 4.40638 * 5.51422 * 180.02562 * 4 1 2 21 21 H 1.09002 * 109.47923 * 346.82233 * 3 2 1 22 22 H 1.09001 * 109.47621 * 226.82070 * 3 2 1 23 23 H 0.97007 * 120.00010 * 180.02562 * 8 7 5 24 24 H 1.09001 * 109.46916 * 150.00018 * 13 4 3 25 25 H 1.09004 * 109.46995 * 30.00046 * 13 4 3 26 26 H 1.09007 * 109.47249 * 59.99836 * 14 13 4 27 27 H 1.08996 * 109.47559 * 300.00104 * 14 13 4 28 28 H 1.09000 * 115.54367 * 9.42205 * 17 15 14 29 29 H 1.09006 * 117.49773 * 0.02562 * 18 17 15 30 30 H 1.08997 * 117.50381 * 145.01871 * 18 17 15 31 31 H 1.09004 * 117.50201 * 214.98317 * 19 17 15 32 32 H 1.09000 * 117.50435 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.4006 -1.3221 5 6 3.4752 -0.5533 -2.2434 6 1 4.0799 -0.2872 -3.0978 7 6 3.0436 -1.8624 -2.0793 8 7 1.9903 -2.1195 -1.3333 9 14 3.9580 -3.2593 -2.9173 10 1 5.3655 -3.2835 -2.4445 11 1 3.3025 -4.5496 -2.5853 12 1 3.9334 -3.0551 -4.3881 13 6 3.2573 1.8211 -1.6586 14 6 1.9471 2.3146 -2.2757 15 6 2.0735 3.7759 -2.6212 16 8 3.1054 4.3622 -2.3975 17 6 0.9128 4.5055 -3.2470 18 6 1.2157 5.4420 -4.4183 19 6 0.8429 6.0212 -3.0513 20 1 -1.0501 0.0001 0.0002 21 1 3.0098 -0.9997 0.2343 22 1 3.0090 0.7040 0.7494 23 1 1.6889 -3.0343 -1.2184 24 1 4.0690 1.9561 -2.3734 25 1 3.4706 2.3915 -0.7546 26 1 1.1353 2.1795 -1.5608 27 1 1.7337 1.7442 -3.1797 28 1 -0.0289 3.9572 -3.2715 29 1 2.2545 5.5302 -4.7366 30 1 0.4731 5.5102 -5.2132 31 1 -0.1449 6.4703 -2.9474 32 1 1.6361 6.4908 -2.4695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799200749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:07 Heat of formation + Delta-G solvation = 65.486897 kcal Electronic energy + Delta-G solvation = -14669.281952 eV Core-core repulsion = 12212.486906 eV Total energy + Delta-G solvation = -2456.795046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.56253 -36.36049 -35.77602 -32.04418 -31.54756 -29.66506 -26.15685 -25.48204 -22.88482 -22.47317 -20.49490 -18.91752 -17.46407 -16.68696 -16.12503 -15.12523 -14.79286 -14.69134 -14.19104 -13.54190 -13.16926 -13.01968 -12.50859 -12.09504 -11.59397 -11.37615 -11.28213 -11.17087 -10.75489 -10.63300 -10.45715 -10.35574 -10.23076 -9.90086 -9.29741 -8.86797 -8.78099 -8.40030 -7.01112 -5.79434 -3.19746 2.20923 3.38181 3.44903 3.46275 3.89372 4.09996 4.27838 4.37823 4.54374 4.79996 4.93057 5.14708 5.33965 5.50899 5.53249 5.73340 5.80656 5.86716 5.91536 5.96278 6.04717 6.24932 6.47241 6.68779 6.72373 6.96300 7.24324 7.42483 7.75515 7.91618 8.28996 9.10378 9.18128 9.77783 10.24186 11.24352 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032322 B = 0.007338 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.063510 B = 3814.677888 C = 4197.264208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.091 4.091 3 C 0.264 3.736 4 N -0.587 5.587 5 C -0.266 4.266 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.889 5.889 9 Si 0.900 3.100 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.160 3.840 14 C -0.185 4.185 15 C 0.387 3.613 16 O -0.467 6.467 17 C -0.221 4.221 18 C -0.153 4.153 19 C -0.156 4.156 20 H 0.190 0.810 21 H 0.097 0.903 22 H 0.037 0.963 23 H 0.255 0.745 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 10.397 -1.725 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 C -0.094 4.094 3 C 0.139 3.861 4 N -0.306 5.306 5 C -0.395 4.395 6 H 0.093 0.907 7 C -0.196 4.196 8 N -0.533 5.533 9 Si 0.730 3.270 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.033 3.967 14 C -0.225 4.225 15 C 0.264 3.736 16 O -0.342 6.342 17 C -0.240 4.240 18 C -0.190 4.190 19 C -0.193 4.193 20 H 0.207 0.793 21 H 0.115 0.885 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.141 0.859 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.466 10.509 -1.574 10.909 hybrid contribution -0.381 -1.060 -0.682 1.317 sum -2.847 9.449 -2.256 10.124 Atomic orbital electron populations 1.24165 0.95304 1.07654 1.05397 1.24350 0.95302 0.94173 0.95590 1.17859 0.82861 0.99845 0.85572 1.44216 1.74600 1.00267 1.11500 1.19204 1.26347 0.88292 1.05626 0.90713 1.24900 0.96474 0.98283 0.99931 1.70117 1.21518 1.19042 1.42587 0.86401 0.79761 0.81762 0.79078 1.21001 1.21733 1.21036 1.20708 0.93424 0.84893 0.97675 1.22835 1.04313 0.91501 1.03873 1.24155 0.85763 0.90976 0.72716 1.90322 1.30283 1.70020 1.43606 1.23032 1.01848 0.93790 1.05330 1.22895 1.03140 1.01652 0.91294 1.22916 1.03306 0.93207 0.99913 0.79324 0.88487 0.94479 0.93476 0.92830 0.93683 0.88884 0.88441 0.85944 0.88235 0.88118 0.88248 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.81 19.25 29.55 0.57 -6.24 16 2 C -0.09 -2.18 10.54 -37.13 -0.39 -2.57 16 3 C 0.26 6.27 5.45 -6.83 -0.04 6.23 16 4 N -0.59 -14.35 2.50 -176.57 -0.44 -14.79 16 5 C -0.27 -7.09 9.66 -15.06 -0.15 -7.24 16 6 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 7 C 0.00 0.09 4.85 -17.43 -0.08 0.00 16 8 N -0.89 -24.94 9.50 55.49 0.53 -24.42 16 9 Si 0.90 21.37 29.61 -169.99 -5.03 16.33 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.16 3.39 4.99 -4.04 -0.02 3.37 16 14 C -0.19 -3.49 5.82 -27.89 -0.16 -3.65 16 15 C 0.39 6.47 6.92 -29.03 -0.20 6.27 16 16 O -0.47 -8.81 16.05 5.99 0.10 -8.71 16 17 C -0.22 -2.92 6.12 -91.78 -0.56 -3.49 16 18 C -0.15 -1.74 10.14 -26.70 -0.27 -2.01 16 19 C -0.16 -1.77 10.05 -26.70 -0.27 -2.04 16 20 H 0.19 3.51 7.80 -54.08 -0.42 3.09 16 21 H 0.10 2.50 6.42 -51.93 -0.33 2.17 16 22 H 0.04 0.78 7.98 -51.93 -0.41 0.37 16 23 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.05 1.15 7.98 -51.93 -0.41 0.74 16 25 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 26 H 0.09 1.81 7.21 -51.93 -0.37 1.43 16 27 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 28 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.24 7.89 -51.93 -0.41 0.83 16 LS Contribution 282.88 15.07 4.26 4.26 Total: -1.00 -29.56 282.88 -6.60 -36.16 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.44 Total: 2.53 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.57 Total: -11.36 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.08 Total: -39.21 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.10 Total: -8.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.56 -6.60 -36.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.647 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds