Wall clock time and date at job start Sun Mar 29 2020 21:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47055 * 106.82128 * 3 2 1 5 5 C 1.36936 * 120.00090 * 264.22349 * 4 3 2 6 6 H 1.08002 * 120.00443 * 196.86549 * 5 4 3 7 7 C 1.38814 * 119.99766 * 16.87750 * 5 4 3 8 8 N 1.31613 * 120.00108 * 22.13931 * 7 5 4 9 9 Si 1.86805 * 119.99701 * 202.14296 * 7 5 4 10 10 H 1.48499 * 109.46953 * 59.99691 * 9 7 5 11 11 H 1.48495 * 109.47129 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47233 * 299.99631 * 9 7 5 13 13 C 1.46505 * 119.99985 * 84.22761 * 4 3 2 14 14 C 1.52996 * 109.46968 * 269.99939 * 13 4 3 15 15 C 1.50697 * 109.47211 * 179.97438 * 14 13 4 16 16 O 1.20766 * 119.99868 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00356 * 179.97438 * 15 14 13 18 18 C 1.52992 * 117.50418 * 223.75121 * 17 15 14 19 19 C 1.52992 * 117.49832 * 155.08672 * 17 15 14 20 20 H 4.40638 * 5.51422 * 180.02562 * 4 1 2 21 21 H 1.09002 * 109.47923 * 346.82233 * 3 2 1 22 22 H 1.09001 * 109.47621 * 226.82070 * 3 2 1 23 23 H 0.97007 * 120.00010 * 180.02562 * 8 7 5 24 24 H 1.09001 * 109.46916 * 150.00018 * 13 4 3 25 25 H 1.09004 * 109.46995 * 30.00046 * 13 4 3 26 26 H 1.09007 * 109.47249 * 59.99836 * 14 13 4 27 27 H 1.08996 * 109.47559 * 300.00104 * 14 13 4 28 28 H 1.09000 * 115.54367 * 9.42205 * 17 15 14 29 29 H 1.09006 * 117.49773 * 0.02562 * 18 17 15 30 30 H 1.08997 * 117.50381 * 145.01871 * 18 17 15 31 31 H 1.09004 * 117.50201 * 214.98317 * 19 17 15 32 32 H 1.09000 * 117.50435 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.4006 -1.3221 5 6 3.4752 -0.5533 -2.2434 6 1 4.0799 -0.2872 -3.0978 7 6 3.0436 -1.8624 -2.0793 8 7 1.9903 -2.1195 -1.3333 9 14 3.9580 -3.2593 -2.9173 10 1 5.3655 -3.2835 -2.4445 11 1 3.3025 -4.5496 -2.5853 12 1 3.9334 -3.0551 -4.3881 13 6 3.2573 1.8211 -1.6586 14 6 1.9471 2.3146 -2.2757 15 6 2.0735 3.7759 -2.6212 16 8 3.1054 4.3622 -2.3975 17 6 0.9128 4.5055 -3.2470 18 6 1.2157 5.4420 -4.4183 19 6 0.8429 6.0212 -3.0513 20 1 -1.0501 0.0001 0.0002 21 1 3.0098 -0.9997 0.2343 22 1 3.0090 0.7040 0.7494 23 1 1.6889 -3.0343 -1.2184 24 1 4.0690 1.9561 -2.3734 25 1 3.4706 2.3915 -0.7546 26 1 1.1353 2.1795 -1.5608 27 1 1.7337 1.7442 -3.1797 28 1 -0.0289 3.9572 -3.2715 29 1 2.2545 5.5302 -4.7366 30 1 0.4731 5.5102 -5.2132 31 1 -0.1449 6.4703 -2.9474 32 1 1.6361 6.4908 -2.4695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799200749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:07 Heat of formation + Delta-G solvation = 49.969826 kcal Electronic energy + Delta-G solvation = -14669.954823 eV Core-core repulsion = 12212.486906 eV Total energy + Delta-G solvation = -2457.467917 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.87927 -38.07157 -36.97731 -33.89039 -33.38292 -31.41839 -27.99874 -27.11214 -24.45577 -23.34219 -22.18004 -20.19581 -19.35002 -18.35130 -17.55349 -16.78125 -16.27822 -16.17833 -15.63155 -15.31362 -14.88725 -14.67748 -13.78306 -13.65453 -13.25173 -13.09150 -12.90553 -12.63713 -12.44447 -12.25633 -12.09827 -11.76976 -11.56564 -11.43245 -10.86660 -10.71598 -10.53065 -10.24549 -8.96340 -7.84099 -5.25635 0.90930 1.48344 1.51754 1.57687 2.32988 2.54264 2.61335 2.91629 3.00088 3.28433 3.80608 3.86041 4.01263 4.11169 4.19214 4.27359 4.29135 4.58174 4.70699 4.78991 4.90548 4.95683 5.05391 5.07617 5.19772 5.28800 5.32049 5.64271 5.69079 6.27631 6.58136 7.09564 7.37254 7.81189 8.24615 9.17327 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032322 B = 0.007338 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.063510 B = 3814.677888 C = 4197.264208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.130 4.130 3 C 0.266 3.734 4 N -0.600 5.600 5 C -0.275 4.275 6 H 0.071 0.929 7 C -0.041 4.041 8 N -0.910 5.910 9 Si 0.960 3.040 10 H -0.281 1.281 11 H -0.296 1.296 12 H -0.280 1.280 13 C 0.160 3.840 14 C -0.174 4.174 15 C 0.393 3.607 16 O -0.493 6.493 17 C -0.237 4.237 18 C -0.143 4.143 19 C -0.144 4.144 20 H 0.223 0.777 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.248 0.752 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 11.454 -2.427 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.133 4.133 3 C 0.140 3.860 4 N -0.320 5.320 5 C -0.405 4.405 6 H 0.089 0.911 7 C -0.238 4.238 8 N -0.554 5.554 9 Si 0.789 3.211 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.206 1.206 13 C 0.034 3.966 14 C -0.214 4.214 15 C 0.271 3.729 16 O -0.370 6.370 17 C -0.256 4.256 18 C -0.180 4.180 19 C -0.181 4.181 20 H 0.240 0.760 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.156 0.844 29 H 0.107 0.893 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.569 11.592 -2.281 12.342 hybrid contribution -0.033 -1.330 -0.443 1.403 sum -3.602 10.261 -2.724 11.211 Atomic orbital electron populations 1.24967 0.96243 1.05929 1.03745 1.24525 0.95891 0.95750 0.97142 1.17757 0.83386 0.99001 0.85825 1.44325 1.75010 1.01130 1.11501 1.19418 1.26073 0.89204 1.05795 0.91079 1.25526 0.97166 1.00026 1.01056 1.70270 1.22545 1.18684 1.43940 0.85458 0.78511 0.78886 0.78240 1.20733 1.22180 1.20631 1.20713 0.94417 0.83553 0.97913 1.22574 1.02503 0.93355 1.02937 1.24172 0.86581 0.89922 0.72182 1.90319 1.31598 1.70171 1.44954 1.22930 1.00654 0.94882 1.07113 1.23042 1.03455 0.99736 0.91778 1.23047 1.04512 0.91131 0.99429 0.76023 0.91147 0.92249 0.94235 0.93725 0.93023 0.89262 0.89702 0.84429 0.89338 0.85278 0.85305 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.47 19.25 74.32 1.43 -11.04 16 2 C -0.13 -6.18 10.54 31.12 0.33 -5.85 16 3 C 0.27 12.74 5.45 84.57 0.46 13.20 16 4 N -0.60 -29.66 2.50 -712.54 -1.78 -31.44 16 5 C -0.28 -14.85 9.66 84.03 0.81 -14.04 16 6 H 0.07 3.79 7.90 -2.91 -0.02 3.77 16 7 C -0.04 -2.23 4.85 84.86 0.41 -1.81 16 8 N -0.91 -51.48 9.50 21.65 0.21 -51.27 16 9 Si 0.96 44.28 29.61 68.60 2.03 46.31 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 C 0.16 6.83 4.99 86.38 0.43 7.26 16 14 C -0.17 -6.52 5.82 29.85 0.17 -6.34 16 15 C 0.39 12.82 6.92 29.10 0.20 13.02 16 16 O -0.49 -18.43 16.05 -1.47 -0.02 -18.46 16 17 C -0.24 -5.74 6.12 -11.54 -0.07 -5.81 16 18 C -0.14 -2.85 10.14 30.62 0.31 -2.54 16 19 C -0.14 -2.85 10.05 30.62 0.31 -2.54 16 20 H 0.22 7.63 7.80 -4.41 -0.03 7.59 16 21 H 0.07 3.73 6.42 -2.39 -0.02 3.71 16 22 H 0.06 2.50 7.98 -2.39 -0.02 2.48 16 23 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 24 H 0.04 1.95 7.98 -2.39 -0.02 1.93 16 25 H 0.05 2.10 7.91 -2.38 -0.02 2.08 16 26 H 0.09 3.42 7.21 -2.38 -0.02 3.40 16 27 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.02 7.89 -2.39 -0.02 2.00 16 Total: -1.00 -62.73 282.88 6.31 -56.41 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.09 Total: 14.96 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.80 Total: -16.51 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.58 Total: -82.71 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.02 Total: -18.46 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -62.73 6.31 -56.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.383 kcal (2) G-P(sol) polarization free energy of solvation -62.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds