Wall clock time and date at job start Sun Mar 29 2020 21:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47103 * 265.78856 * 3 2 1 5 5 C 1.36936 * 120.00264 * 270.00159 * 4 3 2 6 6 H 1.07994 * 120.00017 * 191.15988 * 5 4 3 7 7 C 1.38817 * 119.99560 * 11.15470 * 5 4 3 8 8 N 1.31616 * 120.00185 * 27.61669 * 7 5 4 9 9 Si 1.86799 * 119.99599 * 207.61404 * 7 5 4 10 10 H 1.48503 * 109.47103 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47275 * 120.00192 * 9 7 5 12 12 H 1.48502 * 109.47200 * 240.00307 * 9 7 5 13 13 C 1.46505 * 119.99575 * 90.00404 * 4 3 2 14 14 C 1.50702 * 109.46871 * 271.92278 * 13 4 3 15 15 N 1.31078 * 126.65601 * 269.68485 * 14 13 4 16 16 N 1.28842 * 107.98692 * 180.26565 * 15 14 13 17 17 N 1.28741 * 109.39616 * 359.97438 * 16 15 14 18 18 N 1.29014 * 108.81221 * 0.02562 * 17 16 15 19 19 C 1.46498 * 126.44048 * 180.02562 * 18 17 16 20 20 H 4.40647 * 5.51376 * 179.97438 * 4 1 2 21 21 H 1.09000 * 109.47256 * 145.79045 * 3 2 1 22 22 H 1.09003 * 109.47413 * 25.79070 * 3 2 1 23 23 H 0.96997 * 120.00042 * 179.97438 * 8 7 5 24 24 H 1.08998 * 109.46815 * 151.92789 * 13 4 3 25 25 H 1.08993 * 109.47438 * 31.91808 * 13 4 3 26 26 H 1.09002 * 109.47268 * 269.97738 * 19 18 17 27 27 H 1.09004 * 109.47218 * 29.97030 * 19 18 17 28 28 H 1.09000 * 109.47516 * 149.97552 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1023 1.3775 5 6 3.3620 1.3325 1.9343 6 1 3.8875 1.4108 2.8745 7 6 2.9173 2.4789 1.2900 8 7 1.8667 2.4238 0.4992 9 14 3.8101 4.0997 1.5456 10 1 4.9512 3.8952 2.4737 11 1 4.3166 4.5969 0.2412 12 1 2.8727 5.0953 2.1246 13 6 3.3791 -1.1123 2.1594 14 6 2.1104 -1.5212 2.8624 15 7 1.7242 -1.1502 4.0588 16 7 0.5924 -1.7147 4.3044 17 7 0.2464 -2.4358 3.2956 18 7 1.1566 -2.3428 2.3860 19 6 1.1524 -3.0060 1.0798 20 1 -1.0500 0.0002 -0.0001 21 1 3.0090 0.8507 -0.5778 22 1 3.0098 -0.9245 -0.4471 23 1 1.5558 3.2250 0.0493 24 1 4.1572 -0.9184 2.8976 25 1 3.7004 -1.9138 1.4944 26 1 1.6416 -3.9765 1.1634 27 1 0.1241 -3.1451 0.7462 28 1 1.6885 -2.3900 0.3578 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799201653.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:20 Heat of formation + Delta-G solvation = 206.750428 kcal Electronic energy + Delta-G solvation = -15226.803145 eV Core-core repulsion = 12704.886153 eV Total energy + Delta-G solvation = -2521.916992 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.32920 -36.61425 -34.87803 -32.62042 -31.74950 -30.78112 -28.12346 -26.78359 -26.11236 -22.84833 -22.41699 -20.74839 -17.75973 -16.90679 -16.75394 -16.30020 -15.25601 -14.37920 -14.01448 -13.82445 -13.37566 -13.32206 -12.91214 -12.12690 -11.72600 -11.68900 -11.37835 -11.10675 -10.82487 -10.38458 -10.36575 -10.18238 -10.10902 -9.43285 -9.06647 -8.98192 -8.65150 -7.42915 -5.99030 -3.36457 1.96973 2.68704 3.03486 3.30419 3.40209 3.43055 3.96881 4.13282 4.40704 4.76053 4.81405 5.12150 5.19221 5.30228 5.38063 5.46054 5.63431 5.95286 6.19277 6.24635 6.33899 6.49912 6.88371 6.93017 7.17384 7.65004 7.97853 8.85662 8.98693 9.39121 9.50233 9.90236 11.02505 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.033665 B = 0.010996 C = 0.009821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.521170 B = 2545.873524 C = 2850.414923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.106 4.106 3 C 0.261 3.739 4 N -0.563 5.563 5 C -0.272 4.272 6 H 0.088 0.912 7 C 0.009 3.991 8 N -0.878 5.878 9 Si 0.905 3.095 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.291 1.291 13 C 0.213 3.787 14 C 0.185 3.815 15 N -0.308 5.308 16 N -0.092 5.092 17 N -0.123 5.123 18 N -0.309 5.309 19 C 0.086 3.914 20 H 0.188 0.812 21 H 0.099 0.901 22 H 0.044 0.956 23 H 0.257 0.743 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -9.241 -4.059 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.109 4.109 3 C 0.137 3.863 4 N -0.281 5.281 5 C -0.401 4.401 6 H 0.106 0.894 7 C -0.191 4.191 8 N -0.519 5.519 9 Si 0.734 3.266 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.218 1.218 13 C 0.081 3.919 14 C -0.096 4.096 15 N -0.158 5.158 16 N -0.086 5.086 17 N -0.110 5.110 18 N -0.111 5.111 19 C -0.057 4.057 20 H 0.205 0.795 21 H 0.117 0.883 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.115 0.885 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.943 -9.052 -3.066 9.753 hybrid contribution 0.011 1.048 -0.717 1.269 sum 1.954 -8.005 -3.783 9.067 Atomic orbital electron populations 1.24185 0.95334 1.07567 1.03370 1.24040 0.95076 0.94385 0.97416 1.18059 0.83038 0.99231 0.86019 1.44848 1.73235 1.01442 1.08559 1.19401 1.31405 0.81492 1.07759 0.89421 1.24936 0.96078 0.98274 0.99834 1.70200 1.20164 1.28471 1.33085 0.86190 0.79679 0.83226 0.77553 1.19852 1.21345 1.21811 1.19945 0.88077 0.89911 0.93963 1.28530 0.98297 0.90871 0.91878 1.74931 1.06859 1.20840 1.13205 1.78430 1.07103 1.06143 1.16931 1.78633 1.15209 1.21102 0.96030 1.48213 1.14598 1.32961 1.15301 1.22266 1.05881 0.97875 0.79651 0.79523 0.88287 0.93803 0.93275 0.88475 0.91156 0.89525 0.88439 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.17 19.24 29.55 0.57 -5.60 15 2 C -0.11 -2.32 9.32 -37.12 -0.35 -2.66 15 3 C 0.26 5.34 4.99 -6.82 -0.03 5.31 15 4 N -0.56 -12.27 2.47 -177.94 -0.44 -12.71 15 5 C -0.27 -6.87 9.66 -15.06 -0.15 -7.01 15 6 H 0.09 2.23 7.93 -52.49 -0.42 1.81 15 7 C 0.01 0.24 4.78 -17.43 -0.08 0.16 15 8 N -0.88 -23.81 9.38 55.49 0.52 -23.29 15 9 Si 0.90 20.76 29.63 -169.99 -5.04 15.72 15 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 13 C 0.21 3.83 5.85 -5.19 -0.03 3.80 15 14 C 0.19 3.74 7.58 -155.43 -1.18 2.56 15 15 N -0.31 -7.19 12.36 32.70 0.40 -6.79 15 16 N -0.09 -2.12 13.43 60.35 0.81 -1.31 15 17 N -0.12 -2.56 13.29 60.35 0.80 -1.75 15 18 N -0.31 -5.62 3.75 -65.02 -0.24 -5.86 15 19 C 0.09 1.08 10.63 59.85 0.64 1.72 15 20 H 0.19 3.62 7.80 -54.09 -0.42 3.20 15 21 H 0.10 2.25 6.58 -51.93 -0.34 1.91 15 22 H 0.04 0.70 7.25 -51.93 -0.38 0.32 15 23 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 24 H 0.10 1.68 8.00 -51.93 -0.42 1.27 15 25 H 0.07 0.96 7.60 -51.93 -0.39 0.56 15 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 27 H 0.10 1.14 8.14 -51.93 -0.42 0.71 15 28 H 0.10 1.30 4.92 -51.93 -0.26 1.04 15 LS Contribution 252.34 15.07 3.80 3.80 Total: -1.00 -32.05 252.34 -2.60 -34.64 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -2.60 Total: -0.71 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.61 Total: -1.74 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 1.85 Total: -51.72 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.04 Total: 15.72 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.05 -2.60 -34.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201653.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.395 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 206.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds