Wall clock time and date at job start Sun Mar 29 2020 21:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47103 * 265.78856 * 3 2 1 5 5 C 1.36936 * 120.00264 * 270.00159 * 4 3 2 6 6 H 1.07994 * 120.00017 * 191.15988 * 5 4 3 7 7 C 1.38817 * 119.99560 * 11.15470 * 5 4 3 8 8 N 1.31616 * 120.00185 * 27.61669 * 7 5 4 9 9 Si 1.86799 * 119.99599 * 207.61404 * 7 5 4 10 10 H 1.48503 * 109.47103 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47275 * 120.00192 * 9 7 5 12 12 H 1.48502 * 109.47200 * 240.00307 * 9 7 5 13 13 C 1.46505 * 119.99575 * 90.00404 * 4 3 2 14 14 C 1.50702 * 109.46871 * 271.92278 * 13 4 3 15 15 N 1.31078 * 126.65601 * 269.68485 * 14 13 4 16 16 N 1.28842 * 107.98692 * 180.26565 * 15 14 13 17 17 N 1.28741 * 109.39616 * 359.97438 * 16 15 14 18 18 N 1.29014 * 108.81221 * 0.02562 * 17 16 15 19 19 C 1.46498 * 126.44048 * 180.02562 * 18 17 16 20 20 H 4.40647 * 5.51376 * 179.97438 * 4 1 2 21 21 H 1.09000 * 109.47256 * 145.79045 * 3 2 1 22 22 H 1.09003 * 109.47413 * 25.79070 * 3 2 1 23 23 H 0.96997 * 120.00042 * 179.97438 * 8 7 5 24 24 H 1.08998 * 109.46815 * 151.92789 * 13 4 3 25 25 H 1.08993 * 109.47438 * 31.91808 * 13 4 3 26 26 H 1.09002 * 109.47268 * 269.97738 * 19 18 17 27 27 H 1.09004 * 109.47218 * 29.97030 * 19 18 17 28 28 H 1.09000 * 109.47516 * 149.97552 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1023 1.3775 5 6 3.3620 1.3325 1.9343 6 1 3.8875 1.4108 2.8745 7 6 2.9173 2.4789 1.2900 8 7 1.8667 2.4238 0.4992 9 14 3.8101 4.0997 1.5456 10 1 4.9512 3.8952 2.4737 11 1 4.3166 4.5969 0.2412 12 1 2.8727 5.0953 2.1246 13 6 3.3791 -1.1123 2.1594 14 6 2.1104 -1.5212 2.8624 15 7 1.7242 -1.1502 4.0588 16 7 0.5924 -1.7147 4.3044 17 7 0.2464 -2.4358 3.2956 18 7 1.1566 -2.3428 2.3860 19 6 1.1524 -3.0060 1.0798 20 1 -1.0500 0.0002 -0.0001 21 1 3.0090 0.8507 -0.5778 22 1 3.0098 -0.9245 -0.4471 23 1 1.5558 3.2250 0.0493 24 1 4.1572 -0.9184 2.8976 25 1 3.7004 -1.9138 1.4944 26 1 1.6416 -3.9765 1.1634 27 1 0.1241 -3.1451 0.7462 28 1 1.6885 -2.3900 0.3578 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201653.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:20 Heat of formation + Delta-G solvation = 185.019730 kcal Electronic energy + Delta-G solvation = -15227.745459 eV Core-core repulsion = 12704.886153 eV Total energy + Delta-G solvation = -2522.859306 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.90289 -38.25265 -36.34997 -34.28504 -33.48008 -32.48520 -29.43937 -28.26374 -27.88272 -24.52884 -23.99045 -22.30331 -19.49055 -18.47177 -18.20565 -17.89528 -16.97345 -16.00235 -15.66843 -15.47760 -14.76425 -14.52598 -14.48032 -13.52199 -13.43761 -13.26178 -12.99494 -12.77866 -12.50390 -12.21620 -11.98937 -11.95014 -11.62773 -11.03702 -10.79728 -10.70418 -10.35531 -9.23464 -7.92026 -5.28849 0.44420 1.33270 1.42462 1.47672 1.53247 1.61659 2.30269 2.45962 2.58191 3.14944 3.46967 3.49767 3.73414 4.01181 4.12573 4.29256 4.53493 4.57814 4.66677 4.83789 4.86964 5.01159 5.28340 5.48279 5.56995 5.71468 6.16827 7.00405 7.32761 7.69846 7.78131 8.05365 9.07091 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.033665 B = 0.010996 C = 0.009821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.521170 B = 2545.873524 C = 2850.414923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.113 4.113 3 C 0.260 3.740 4 N -0.574 5.574 5 C -0.271 4.271 6 H 0.080 0.920 7 C -0.038 4.038 8 N -0.904 5.904 9 Si 0.956 3.044 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.309 1.309 13 C 0.212 3.788 14 C 0.182 3.818 15 N -0.346 5.346 16 N -0.125 5.125 17 N -0.123 5.123 18 N -0.294 5.294 19 C 0.070 3.930 20 H 0.200 0.800 21 H 0.072 0.928 22 H 0.098 0.902 23 H 0.247 0.753 24 H 0.101 0.899 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -10.932 -4.967 12.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.116 4.116 3 C 0.135 3.865 4 N -0.292 5.292 5 C -0.400 4.400 6 H 0.098 0.902 7 C -0.235 4.235 8 N -0.547 5.547 9 Si 0.785 3.215 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.237 1.237 13 C 0.081 3.919 14 C -0.099 4.099 15 N -0.197 5.197 16 N -0.119 5.119 17 N -0.110 5.110 18 N -0.097 5.097 19 C -0.069 4.069 20 H 0.217 0.783 21 H 0.090 0.910 22 H 0.116 0.884 23 H 0.057 0.943 24 H 0.119 0.881 25 H 0.143 0.857 26 H 0.150 0.850 27 H 0.126 0.874 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.905 -10.777 -3.983 11.851 hybrid contribution -0.280 1.434 -0.453 1.530 sum 2.626 -9.343 -4.437 10.671 Atomic orbital electron populations 1.24698 0.96169 1.07924 1.03530 1.24466 0.95753 0.94113 0.97250 1.18187 0.82255 1.00741 0.85311 1.44843 1.73394 1.01522 1.09454 1.19543 1.30246 0.83229 1.07001 0.90244 1.25471 0.96877 1.00569 1.00596 1.70328 1.21446 1.28294 1.34649 0.85395 0.78551 0.80170 0.77348 1.19004 1.21128 1.23735 1.20298 0.86841 0.90010 0.94761 1.28687 0.98875 0.90952 0.91388 1.74838 1.07460 1.21961 1.15408 1.78400 1.07719 1.07524 1.18261 1.78532 1.15617 1.20641 0.96244 1.48561 1.13098 1.31906 1.16114 1.22819 1.07432 0.99628 0.77065 0.78293 0.90973 0.88440 0.94308 0.88084 0.85658 0.84954 0.87444 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -12.76 19.24 74.32 1.43 -11.33 15 2 C -0.11 -4.73 9.32 31.13 0.29 -4.44 15 3 C 0.26 9.95 4.99 84.57 0.42 10.38 15 4 N -0.57 -23.74 2.47 -716.88 -1.77 -25.51 15 5 C -0.27 -13.42 9.66 84.03 0.81 -12.60 15 6 H 0.08 4.00 7.93 -2.91 -0.02 3.97 15 7 C -0.04 -1.95 4.78 84.86 0.41 -1.55 15 8 N -0.90 -49.22 9.38 21.65 0.20 -49.02 15 9 Si 0.96 42.99 29.63 68.60 2.03 45.02 15 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 12 H -0.31 -14.69 7.11 99.48 0.71 -13.98 15 13 C 0.21 6.90 5.85 85.63 0.50 7.40 15 14 C 0.18 6.94 7.58 138.13 1.05 7.99 15 15 N -0.35 -15.90 12.36 -50.45 -0.62 -16.52 15 16 N -0.13 -5.72 13.43 37.01 0.50 -5.22 15 17 N -0.12 -4.91 13.29 37.02 0.49 -4.42 15 18 N -0.29 -9.86 3.75 -359.64 -1.35 -11.21 15 19 C 0.07 1.46 10.63 127.77 1.36 2.82 15 20 H 0.20 7.50 7.80 -4.42 -0.03 7.47 15 21 H 0.07 3.20 6.58 -2.39 -0.02 3.18 15 22 H 0.10 2.65 7.25 -2.39 -0.02 2.63 15 23 H 0.25 13.47 8.31 -92.71 -0.77 12.70 15 24 H 0.10 3.22 8.00 -2.39 -0.02 3.21 15 25 H 0.13 2.70 7.60 -2.39 -0.02 2.68 15 26 H 0.13 1.62 8.14 -2.39 -0.02 1.60 15 27 H 0.11 2.09 8.14 -2.39 -0.02 2.07 15 28 H 0.11 2.21 4.92 -2.39 -0.01 2.19 15 Total: -1.00 -69.98 252.34 6.92 -63.06 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.17 Total: 5.16 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.26 Total: -1.33 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -2.55 Total: -111.91 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -69.98 6.92 -63.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201653.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.080 kcal (2) G-P(sol) polarization free energy of solvation -69.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds