Wall clock time and date at job start Sun Mar 29 2020 21:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47507 * 2 1 4 4 C 1.47209 * 109.46718 * 119.99825 * 2 1 3 5 5 C 2.64601 * 109.46634 * 119.99854 * 2 1 3 6 6 C 4.07808 * 109.46692 * 119.99739 * 2 1 3 7 7 O 1.21661 * 119.99644 * 307.92571 * 6 5 4 8 8 N 1.34769 * 119.99996 * 127.65595 * 6 5 4 9 9 C 1.36820 * 120.00173 * 174.74532 * 8 6 5 10 10 H 1.07991 * 119.99725 * 138.06465 * 9 8 6 11 11 C 1.39072 * 119.99894 * 318.06420 * 9 8 6 12 12 N 1.31347 * 120.00107 * 161.92540 * 11 9 8 13 13 Si 1.86805 * 120.00194 * 341.92369 * 11 9 8 14 14 H 1.48499 * 109.46818 * 94.04097 * 13 11 9 15 15 H 1.48495 * 109.47273 * 214.04266 * 13 11 9 16 16 H 1.48502 * 109.47191 * 334.04664 * 13 11 9 17 17 C 1.46497 * 120.00063 * 354.75184 * 8 6 5 18 18 C 1.52999 * 117.50349 * 183.23749 * 17 8 6 19 19 C 1.52997 * 117.50575 * 114.57510 * 17 8 6 20 20 H 1.09001 * 109.46886 * 60.00241 * 1 2 3 21 21 H 1.09002 * 109.47590 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46960 * 300.00731 * 1 2 3 23 23 H 1.09001 * 109.46960 * 239.99269 * 2 1 3 24 24 H 1.08998 * 109.47181 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46851 * 299.99780 * 3 2 1 26 26 H 1.09001 * 109.47608 * 59.99665 * 3 2 1 27 27 H 0.97000 * 120.00295 * 179.97438 * 12 11 9 28 28 H 1.09007 * 115.55142 * 328.90036 * 17 8 6 29 29 H 1.09008 * 117.49545 * 359.97438 * 18 17 8 30 30 H 1.08996 * 117.50593 * 145.01133 * 18 17 8 31 31 H 1.09001 * 117.50485 * 214.98250 * 19 17 8 32 32 H 1.09004 * 117.49753 * 359.97300 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0206 -0.6939 1.2020 5 6 2.4118 -1.2473 2.1606 6 6 2.8891 -1.9223 3.3299 7 8 2.1712 -2.0288 4.3064 8 7 4.1315 -2.4443 3.3467 9 6 4.6271 -2.9939 4.4975 10 1 5.1863 -3.9169 4.4579 11 6 4.4108 -2.3637 5.7183 12 7 4.5592 -3.0334 6.8384 13 14 3.9094 -0.5648 5.7650 14 1 2.4292 -0.4651 5.8306 15 1 4.5028 0.0836 6.9619 16 1 4.3976 0.1171 4.5394 17 6 4.9513 -2.4233 2.1329 18 6 6.3228 -3.0986 2.1948 19 6 6.2223 -1.5718 2.1533 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 1.8933 -0.5140 -0.8899 24 1 3.1301 1.4423 0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6768 1.9564 0.8899 27 1 4.4087 -2.5938 7.6899 28 1 4.4020 -2.4851 1.1933 29 1 6.6153 -3.5582 3.1389 30 1 6.6759 -3.6043 1.2961 31 1 6.5093 -1.0735 1.2273 32 1 6.4483 -1.0268 3.0698 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823519665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:55 Heat of formation + Delta-G solvation = 48.609391 kcal Electronic energy + Delta-G solvation = -14870.375356 eV Core-core repulsion = 12412.848447 eV Total energy + Delta-G solvation = -2457.526910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.07095 -36.43407 -36.11769 -33.02591 -31.84070 -31.03640 -27.21582 -25.71401 -23.20006 -21.96998 -21.56268 -20.15138 -18.19997 -16.47978 -15.91334 -15.42981 -14.65882 -14.38702 -14.05988 -13.48520 -13.35564 -13.25474 -12.57458 -12.28042 -11.98929 -11.69639 -11.39177 -11.36916 -11.18867 -10.81276 -10.46183 -10.28132 -10.05759 -9.88273 -9.73248 -9.55186 -8.83596 -8.64116 -7.58911 -6.31940 -4.05071 2.33800 2.97659 3.38595 3.43921 3.61152 4.07739 4.22000 4.43376 4.67279 4.68906 5.00448 5.10207 5.17510 5.27379 5.46915 5.55492 5.58807 5.67237 5.73929 5.76822 5.85579 6.08661 6.15821 6.19063 6.20890 6.32857 6.66006 6.82977 7.72623 7.82472 7.93886 8.65173 8.79332 9.29303 9.70656 10.73169 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.010154 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.489276 B = 2756.851768 C = 3267.530876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.021 3.979 3 C -0.145 4.145 4 C -0.152 4.152 5 C -0.168 4.168 6 C 0.544 3.456 7 O -0.533 6.533 8 N -0.415 5.415 9 C -0.343 4.343 10 H 0.104 0.896 11 C 0.094 3.906 12 N -0.854 5.854 13 Si 0.898 3.102 14 H -0.252 1.252 15 H -0.301 1.301 16 H -0.275 1.275 17 C 0.062 3.938 18 C -0.170 4.170 19 C -0.196 4.196 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.092 0.908 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.276 0.724 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 6.391 -14.130 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.003 3.997 3 C -0.202 4.202 4 C -0.155 4.155 5 C -0.171 4.171 6 C 0.335 3.665 7 O -0.417 6.417 8 N -0.134 5.134 9 C -0.469 4.469 10 H 0.121 0.879 11 C -0.117 4.117 12 N -0.488 5.488 13 Si 0.727 3.273 14 H -0.177 1.177 15 H -0.229 1.229 16 H -0.200 1.200 17 C -0.044 4.044 18 C -0.207 4.207 19 C -0.235 4.235 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.110 0.890 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.460 6.274 -13.397 14.865 hybrid contribution -0.126 0.852 0.120 0.870 sum -1.586 7.127 -13.277 15.152 Atomic orbital electron populations 1.21838 0.93611 1.02576 1.02234 1.18251 0.95670 0.94748 0.91012 1.21828 1.01693 0.94447 1.02243 1.22290 1.00168 0.97509 0.95579 1.21595 1.00067 1.00279 0.95165 1.14898 0.82238 0.84682 0.84679 1.90717 1.55591 1.60796 1.34597 1.42974 1.09542 1.51498 1.09383 1.18809 1.38021 1.08038 0.82003 0.87877 1.25301 0.92724 0.99012 0.94649 1.69691 1.44242 1.36704 0.98160 0.86575 0.80666 0.83257 0.76830 1.17695 1.22931 1.19993 1.21854 0.86945 1.05341 0.90213 1.23153 0.98955 0.95004 1.03631 1.23261 1.03477 0.94071 1.02657 0.91812 0.92132 0.92125 0.88982 0.92090 0.91735 0.92196 0.91438 0.87148 0.86959 0.89284 0.89450 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.15 37.16 0.34 -1.26 16 2 C 0.02 0.26 3.30 -93.41 -0.31 -0.04 16 3 C -0.14 -1.58 9.15 37.15 0.34 -1.24 16 4 C -0.15 -2.75 12.56 -37.12 -0.47 -3.22 16 5 C -0.17 -3.74 11.96 -38.83 -0.46 -4.21 16 6 C 0.54 14.44 5.47 -14.33 -0.08 14.36 16 7 O -0.53 -16.14 12.93 5.22 0.07 -16.07 16 8 N -0.42 -10.59 2.51 -110.43 -0.28 -10.87 16 9 C -0.34 -9.74 8.63 -15.02 -0.13 -9.87 16 10 H 0.10 2.99 7.02 -52.49 -0.37 2.62 16 11 C 0.09 2.79 4.88 -17.45 -0.09 2.70 16 12 N -0.85 -25.96 13.95 55.50 0.77 -25.19 16 13 Si 0.90 24.56 24.77 -169.99 -4.21 20.35 16 14 H -0.25 -7.30 6.35 56.52 0.36 -6.94 16 15 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 16 H -0.27 -7.31 7.11 56.52 0.40 -6.91 16 17 C 0.06 1.25 5.82 -67.93 -0.40 0.85 16 18 C -0.17 -2.99 9.80 -26.70 -0.26 -3.25 16 19 C -0.20 -3.50 10.36 -26.70 -0.28 -3.77 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.28 7.86 8.31 -40.82 -0.34 7.52 16 28 H 0.11 1.99 7.43 -51.93 -0.39 1.60 16 29 H 0.11 2.21 6.52 -51.92 -0.34 1.87 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 LS Contribution 276.50 15.07 4.17 4.17 Total: -1.00 -33.48 276.50 -5.76 -39.24 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.50 Total: -2.69 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.79 Total: -8.94 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.50 Total: -36.06 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.07 Total: -16.07 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.21 Total: 20.35 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.48 -5.76 -39.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823519665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.851 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds