Wall clock time and date at job start Sun Mar 29 2020 21:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47507 * 2 1 4 4 C 1.47209 * 109.46718 * 119.99825 * 2 1 3 5 5 C 2.64601 * 109.46634 * 119.99854 * 2 1 3 6 6 C 4.07808 * 109.46692 * 119.99739 * 2 1 3 7 7 O 1.21661 * 119.99644 * 307.92571 * 6 5 4 8 8 N 1.34769 * 119.99996 * 127.65595 * 6 5 4 9 9 C 1.36820 * 120.00173 * 174.74532 * 8 6 5 10 10 H 1.07991 * 119.99725 * 138.06465 * 9 8 6 11 11 C 1.39072 * 119.99894 * 318.06420 * 9 8 6 12 12 N 1.31347 * 120.00107 * 161.92540 * 11 9 8 13 13 Si 1.86805 * 120.00194 * 341.92369 * 11 9 8 14 14 H 1.48499 * 109.46818 * 94.04097 * 13 11 9 15 15 H 1.48495 * 109.47273 * 214.04266 * 13 11 9 16 16 H 1.48502 * 109.47191 * 334.04664 * 13 11 9 17 17 C 1.46497 * 120.00063 * 354.75184 * 8 6 5 18 18 C 1.52999 * 117.50349 * 183.23749 * 17 8 6 19 19 C 1.52997 * 117.50575 * 114.57510 * 17 8 6 20 20 H 1.09001 * 109.46886 * 60.00241 * 1 2 3 21 21 H 1.09002 * 109.47590 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46960 * 300.00731 * 1 2 3 23 23 H 1.09001 * 109.46960 * 239.99269 * 2 1 3 24 24 H 1.08998 * 109.47181 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46851 * 299.99780 * 3 2 1 26 26 H 1.09001 * 109.47608 * 59.99665 * 3 2 1 27 27 H 0.97000 * 120.00295 * 179.97438 * 12 11 9 28 28 H 1.09007 * 115.55142 * 328.90036 * 17 8 6 29 29 H 1.09008 * 117.49545 * 359.97438 * 18 17 8 30 30 H 1.08996 * 117.50593 * 145.01133 * 18 17 8 31 31 H 1.09001 * 117.50485 * 214.98250 * 19 17 8 32 32 H 1.09004 * 117.49753 * 359.97300 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0206 -0.6939 1.2020 5 6 2.4118 -1.2473 2.1606 6 6 2.8891 -1.9223 3.3299 7 8 2.1712 -2.0288 4.3064 8 7 4.1315 -2.4443 3.3467 9 6 4.6271 -2.9939 4.4975 10 1 5.1863 -3.9169 4.4579 11 6 4.4108 -2.3637 5.7183 12 7 4.5592 -3.0334 6.8384 13 14 3.9094 -0.5648 5.7650 14 1 2.4292 -0.4651 5.8306 15 1 4.5028 0.0836 6.9619 16 1 4.3976 0.1171 4.5394 17 6 4.9513 -2.4233 2.1329 18 6 6.3228 -3.0986 2.1948 19 6 6.2223 -1.5718 2.1533 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 1.8933 -0.5140 -0.8899 24 1 3.1301 1.4423 0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6768 1.9564 0.8899 27 1 4.4087 -2.5938 7.6899 28 1 4.4020 -2.4851 1.1933 29 1 6.6153 -3.5582 3.1389 30 1 6.6759 -3.6043 1.2961 31 1 6.5093 -1.0735 1.2273 32 1 6.4483 -1.0268 3.0698 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823519665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:54 Heat of formation + Delta-G solvation = 26.545067 kcal Electronic energy + Delta-G solvation = -14871.332137 eV Core-core repulsion = 12412.848447 eV Total energy + Delta-G solvation = -2458.483691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00080 -38.16183 -37.26526 -35.08854 -33.71254 -32.68797 -28.04102 -27.72710 -24.82633 -23.38151 -22.99875 -21.87865 -20.09884 -18.33911 -17.48934 -17.18581 -16.27355 -15.97485 -15.56810 -15.25954 -15.09834 -14.72270 -14.36478 -13.68420 -13.10750 -13.10286 -12.89767 -12.74836 -12.41828 -12.28927 -12.26230 -12.14515 -11.76299 -11.41131 -11.27798 -11.19134 -10.86098 -10.78954 -9.56878 -8.58562 -6.29781 0.59402 1.17862 1.24759 1.36652 1.42707 2.22398 2.38663 2.52697 2.85431 3.19646 3.22006 3.96740 4.07849 4.11694 4.16700 4.21709 4.25456 4.52944 4.79528 4.81882 4.88335 4.95545 4.97708 5.11658 5.16717 5.34931 5.36462 5.39587 5.56469 5.74325 6.31719 6.56278 6.69939 7.13605 7.66129 8.50569 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.010154 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.489276 B = 2756.851768 C = 3267.530876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.013 3.987 3 C -0.144 4.144 4 C -0.075 4.075 5 C -0.253 4.253 6 C 0.542 3.458 7 O -0.590 6.590 8 N -0.428 5.428 9 C -0.340 4.340 10 H 0.087 0.913 11 C 0.052 3.948 12 N -0.893 5.893 13 Si 0.942 3.058 14 H -0.282 1.282 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.033 3.967 18 C -0.156 4.156 19 C -0.180 4.180 20 H 0.102 0.898 21 H 0.054 0.946 22 H 0.045 0.955 23 H 0.130 0.870 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.044 0.956 27 H 0.278 0.722 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 8.128 -18.243 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.005 4.005 3 C -0.201 4.201 4 C -0.078 4.078 5 C -0.256 4.256 6 C 0.335 3.665 7 O -0.477 6.477 8 N -0.145 5.145 9 C -0.467 4.467 10 H 0.105 0.895 11 C -0.155 4.155 12 N -0.529 5.529 13 Si 0.771 3.229 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.191 1.191 17 C -0.071 4.071 18 C -0.193 4.193 19 C -0.218 4.218 20 H 0.120 0.880 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.148 0.852 24 H 0.078 0.922 25 H 0.121 0.879 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.102 0.898 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.259 8.018 -17.540 19.327 hybrid contribution -0.250 0.309 1.166 1.232 sum -1.509 8.327 -16.375 18.432 Atomic orbital electron populations 1.21876 0.92185 1.02690 1.03491 1.18851 0.96758 0.95572 0.89285 1.21863 1.01688 0.93061 1.03478 1.23512 0.96106 0.93512 0.94696 1.20916 1.04210 1.04009 0.96475 1.15420 0.82050 0.83767 0.85308 1.90656 1.57067 1.62932 1.37055 1.43122 1.10168 1.51085 1.10158 1.18755 1.36926 1.07670 0.83332 0.89533 1.25844 0.93320 1.01417 0.94883 1.69749 1.46785 1.37753 0.98617 0.85863 0.78373 0.81105 0.77598 1.20945 1.21266 1.19053 1.22190 0.87607 1.08567 0.88748 1.23223 0.96582 0.95285 1.04247 1.23324 1.00785 0.94208 1.03515 0.87961 0.92674 0.93585 0.85241 0.92198 0.87939 0.93661 0.91220 0.84609 0.89828 0.84825 0.84949 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.15 71.98 0.66 -1.90 16 2 C 0.01 0.26 3.30 -12.60 -0.04 0.22 16 3 C -0.14 -2.42 9.15 71.98 0.66 -1.77 16 4 C -0.08 -2.51 12.56 31.13 0.39 -2.12 16 5 C -0.25 -11.15 11.96 30.02 0.36 -10.79 16 6 C 0.54 29.51 5.47 85.49 0.47 29.98 16 7 O -0.59 -37.38 12.93 -4.22 -0.05 -37.43 16 8 N -0.43 -22.19 2.51 -621.54 -1.56 -23.75 16 9 C -0.34 -20.06 8.63 84.12 0.73 -19.34 16 10 H 0.09 5.27 7.02 -2.92 -0.02 5.25 16 11 C 0.05 3.20 4.88 84.97 0.41 3.61 16 12 N -0.89 -56.63 13.95 21.68 0.30 -56.33 16 13 Si 0.94 52.61 24.77 68.60 1.70 54.31 16 14 H -0.28 -17.09 6.35 99.48 0.63 -16.46 16 15 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 16 H -0.27 -14.16 7.11 99.48 0.71 -13.45 16 17 C 0.03 1.27 5.82 44.99 0.26 1.53 16 18 C -0.16 -5.17 9.80 30.62 0.30 -4.87 16 19 C -0.18 -5.96 10.36 30.62 0.32 -5.65 16 20 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.28 16.56 8.31 -92.71 -0.77 15.79 16 28 H 0.14 4.50 7.43 -2.38 -0.02 4.49 16 29 H 0.08 3.29 6.52 -2.38 -0.02 3.27 16 30 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.13 3.19 8.14 -2.39 -0.02 3.18 16 32 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -78.66 276.50 5.93 -72.74 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.03 Total: 1.54 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 4.51 Total: -11.08 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.26 Total: -80.08 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.05 Total: -37.43 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 1.70 Total: 54.31 kcal Total: -78.66 5.93 -72.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823519665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.281 kcal (2) G-P(sol) polarization free energy of solvation -78.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds