Wall clock time and date at job start Sun Mar 29 2020 22:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42888 * 109.47283 * 2 1 4 4 N 1.41604 * 114.00078 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00040 * 270.00225 * 4 3 2 6 6 H 1.07998 * 119.99767 * 180.02562 * 5 4 3 7 7 C 1.38803 * 120.00044 * 359.97438 * 5 4 3 8 8 N 1.31624 * 120.00467 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00087 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47117 * 60.00111 * 9 7 5 11 11 H 1.48503 * 109.47116 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46675 * 299.99694 * 9 7 5 13 13 C 1.46497 * 119.99771 * 90.00302 * 4 3 2 14 14 C 1.50707 * 109.47012 * 254.99837 * 13 4 3 15 15 C 1.38238 * 119.99792 * 90.00154 * 14 13 4 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.98090 * 14 13 4 20 20 H 1.08992 * 109.47445 * 59.99487 * 1 2 3 21 21 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46935 * 299.99912 * 1 2 3 23 23 H 1.09004 * 109.46432 * 240.00064 * 2 1 3 24 24 H 1.09000 * 109.47098 * 120.00448 * 2 1 3 25 25 H 0.96992 * 120.00614 * 179.97438 * 8 7 5 26 26 H 1.09005 * 109.47643 * 135.00298 * 13 4 3 27 27 H 1.09000 * 109.47513 * 14.99462 * 13 4 3 28 28 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 29 29 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 32 32 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3471 0.0000 4 7 3.4180 1.4589 -0.0006 5 6 4.1010 1.5128 1.1850 6 1 5.1776 1.5984 1.1846 7 6 3.4097 1.4583 2.3874 8 7 2.0975 1.3554 2.3881 9 14 4.3414 1.5324 4.0048 10 1 5.0967 2.8085 4.0829 11 1 3.3799 1.4559 5.1339 12 1 5.2881 0.3911 4.0833 13 6 4.1476 1.5170 -1.2696 14 6 4.8237 0.1939 -1.5213 15 6 4.1596 -0.8008 -2.2146 16 6 4.7800 -2.0143 -2.4459 17 6 6.0646 -2.2329 -1.9845 18 6 6.7267 -1.2402 -1.2866 19 6 6.1080 -0.0250 -1.0593 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8932 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 1.6144 1.3169 3.2282 26 1 4.8988 2.3054 -1.2212 27 1 3.4504 1.7287 -2.0803 28 1 3.1561 -0.6298 -2.5755 29 1 4.2611 -2.7915 -2.9872 30 1 6.5494 -3.1808 -2.1657 31 1 7.7287 -1.4125 -0.9223 32 1 6.6271 0.7523 -0.5183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832791368.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:50 Heat of formation + Delta-G solvation = 52.562582 kcal Electronic energy + Delta-G solvation = -15268.597658 eV Core-core repulsion = 12811.242172 eV Total energy + Delta-G solvation = -2457.355487 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.69880 -36.06492 -33.17705 -31.88304 -30.39031 -30.16141 -28.41234 -25.58159 -22.61883 -22.06795 -21.31462 -20.33510 -17.50266 -16.33079 -15.35418 -14.77319 -14.51853 -14.28009 -13.83894 -13.23750 -13.15168 -12.88746 -12.62806 -12.03582 -11.77517 -11.38494 -10.98948 -10.89059 -10.77247 -10.65459 -10.51162 -10.37009 -9.96894 -9.77178 -8.90651 -8.43559 -8.36616 -7.94582 -6.94218 -5.68861 -3.14570 1.88486 1.92216 3.39374 3.43352 3.44353 4.03854 4.45476 4.69810 5.34694 5.35985 5.44227 5.53923 5.71196 5.95443 6.03743 6.12498 6.18884 6.21230 6.40220 6.48526 6.57510 6.60510 6.61297 6.95643 6.97505 7.12137 7.15855 7.31036 7.39406 7.54736 7.69458 8.34133 9.29990 9.88320 10.31202 11.37287 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.011649 C = 0.008894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.462522 B = 2402.979879 C = 3147.281766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.046 3.954 3 O -0.108 6.108 4 N -0.453 5.453 5 C -0.269 4.269 6 H 0.089 0.911 7 C 0.011 3.989 8 N -0.873 5.873 9 Si 0.902 3.098 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.187 3.813 14 C -0.090 4.090 15 C -0.113 4.113 16 C -0.127 4.127 17 C -0.138 4.138 18 C -0.126 4.126 19 C -0.103 4.103 20 H 0.042 0.958 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.007 0.993 24 H 0.051 0.949 25 H 0.249 0.751 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -4.526 -7.625 9.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 O -0.114 6.114 4 N -0.215 5.215 5 C -0.396 4.396 6 H 0.106 0.894 7 C -0.190 4.190 8 N -0.515 5.515 9 Si 0.732 3.268 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.211 1.211 13 C 0.062 3.938 14 C -0.093 4.093 15 C -0.132 4.132 16 C -0.145 4.145 17 C -0.157 4.157 18 C -0.144 4.144 19 C -0.122 4.122 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.026 0.974 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.712 -4.297 -7.450 9.367 hybrid contribution 0.402 -0.758 1.081 1.380 sum 4.114 -5.054 -6.370 9.113 Atomic orbital electron populations 1.21571 0.96172 0.99851 1.01805 1.22623 0.92961 0.90024 0.97761 1.90748 1.04076 1.20579 1.95985 1.46445 0.91802 1.82631 1.00617 1.19351 0.90563 1.47177 0.82536 0.89374 1.24881 0.95506 1.01030 0.97579 1.70167 1.04939 1.51831 1.24570 0.86389 0.78790 0.78051 0.83605 1.20782 1.21509 1.21103 1.20123 0.94030 0.91498 0.88193 1.21252 0.93813 0.99655 0.94627 1.21008 0.99272 0.93506 0.99391 1.21010 0.95403 0.97075 1.01059 1.20940 0.95491 0.98797 1.00456 1.21063 0.99680 0.94083 0.99541 1.21031 0.95025 0.97132 0.98985 0.93934 0.93486 0.91623 0.97446 0.93056 0.94026 0.91643 0.91908 0.86872 0.87057 0.87122 0.86925 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 10.28 37.16 0.38 -2.35 16 2 C 0.05 1.11 6.28 37.16 0.23 1.34 16 3 O -0.11 -2.91 9.19 -11.47 -0.11 -3.02 16 4 N -0.45 -11.67 3.06 -61.09 -0.19 -11.86 16 5 C -0.27 -7.35 9.70 -15.06 -0.15 -7.50 16 6 H 0.09 2.28 7.79 -52.49 -0.41 1.87 16 7 C 0.01 0.30 5.49 -17.43 -0.10 0.21 16 8 N -0.87 -25.51 9.94 55.49 0.55 -24.95 16 9 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.19 3.88 6.18 -5.19 -0.03 3.85 16 14 C -0.09 -1.73 5.26 -104.62 -0.55 -2.28 16 15 C -0.11 -2.03 8.93 -39.58 -0.35 -2.38 16 16 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 17 C -0.14 -2.12 10.05 -39.58 -0.40 -2.52 16 18 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 19 C -0.10 -1.86 9.65 -39.58 -0.38 -2.24 16 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 23 H 0.01 0.17 6.47 -51.93 -0.34 -0.17 16 24 H 0.05 1.40 7.29 -51.93 -0.38 1.02 16 25 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 27 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 28 H 0.11 1.96 7.26 -52.48 -0.38 1.58 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.12 2.05 8.02 -52.49 -0.42 1.63 16 LS Contribution 274.89 15.07 4.14 4.14 Total: -1.00 -30.56 274.89 -7.20 -37.76 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.44 Total: -0.13 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -2.14 Total: -18.73 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.36 Total: -36.81 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -0.11 Total: -3.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.56 -7.20 -37.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832791368.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.321 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds