Wall clock time and date at job start Sun Mar 29 2020 22:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42888 * 109.47283 * 2 1 4 4 N 1.41604 * 114.00078 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00040 * 270.00225 * 4 3 2 6 6 H 1.07998 * 119.99767 * 180.02562 * 5 4 3 7 7 C 1.38803 * 120.00044 * 359.97438 * 5 4 3 8 8 N 1.31624 * 120.00467 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00087 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47117 * 60.00111 * 9 7 5 11 11 H 1.48503 * 109.47116 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46675 * 299.99694 * 9 7 5 13 13 C 1.46497 * 119.99771 * 90.00302 * 4 3 2 14 14 C 1.50707 * 109.47012 * 254.99837 * 13 4 3 15 15 C 1.38238 * 119.99792 * 90.00154 * 14 13 4 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.98090 * 14 13 4 20 20 H 1.08992 * 109.47445 * 59.99487 * 1 2 3 21 21 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46935 * 299.99912 * 1 2 3 23 23 H 1.09004 * 109.46432 * 240.00064 * 2 1 3 24 24 H 1.09000 * 109.47098 * 120.00448 * 2 1 3 25 25 H 0.96992 * 120.00614 * 179.97438 * 8 7 5 26 26 H 1.09005 * 109.47643 * 135.00298 * 13 4 3 27 27 H 1.09000 * 109.47513 * 14.99462 * 13 4 3 28 28 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 29 29 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 32 32 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3471 0.0000 4 7 3.4180 1.4589 -0.0006 5 6 4.1010 1.5128 1.1850 6 1 5.1776 1.5984 1.1846 7 6 3.4097 1.4583 2.3874 8 7 2.0975 1.3554 2.3881 9 14 4.3414 1.5324 4.0048 10 1 5.0967 2.8085 4.0829 11 1 3.3799 1.4559 5.1339 12 1 5.2881 0.3911 4.0833 13 6 4.1476 1.5170 -1.2696 14 6 4.8237 0.1939 -1.5213 15 6 4.1596 -0.8008 -2.2146 16 6 4.7800 -2.0143 -2.4459 17 6 6.0646 -2.2329 -1.9845 18 6 6.7267 -1.2402 -1.2866 19 6 6.1080 -0.0250 -1.0593 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8932 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 1.6144 1.3169 3.2282 26 1 4.8988 2.3054 -1.2212 27 1 3.4504 1.7287 -2.0803 28 1 3.1561 -0.6298 -2.5755 29 1 4.2611 -2.7915 -2.9872 30 1 6.5494 -3.1808 -2.1657 31 1 7.7287 -1.4125 -0.9223 32 1 6.6271 0.7523 -0.5183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832791368.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:49 Heat of formation + Delta-G solvation = 35.942387 kcal Electronic energy + Delta-G solvation = -15269.318364 eV Core-core repulsion = 12811.242172 eV Total energy + Delta-G solvation = -2458.076192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05860 -37.93589 -34.96241 -33.74752 -31.90160 -31.65567 -30.15801 -27.37240 -24.41223 -23.41551 -23.06829 -21.83716 -19.49165 -17.69321 -17.15914 -16.49218 -16.04268 -15.93435 -15.61147 -15.05803 -14.88008 -14.17602 -14.11058 -13.45690 -13.38694 -13.12175 -12.80786 -12.70589 -12.56832 -12.39296 -12.04573 -11.92719 -11.70523 -11.66574 -10.91009 -10.17981 -9.69955 -9.52103 -8.92261 -7.76554 -5.23882 0.54904 0.61305 1.46315 1.49144 1.54316 2.25720 2.68754 3.08396 3.42157 4.04611 4.13176 4.24878 4.33280 4.41040 4.45936 4.58324 4.66609 4.72526 4.82999 4.87144 4.96295 5.22253 5.26002 5.32236 5.43728 5.47840 5.61371 5.67056 5.69303 5.90822 6.24457 6.28772 7.22936 7.93342 8.28858 9.29330 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.011649 C = 0.008894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.462522 B = 2402.979879 C = 3147.281766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.056 3.944 3 O -0.137 6.137 4 N -0.472 5.472 5 C -0.273 4.273 6 H 0.097 0.903 7 C -0.048 4.048 8 N -0.905 5.905 9 Si 0.966 3.034 10 H -0.274 1.274 11 H -0.296 1.296 12 H -0.279 1.279 13 C 0.187 3.813 14 C -0.110 4.110 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.133 4.133 18 C -0.129 4.129 19 C -0.120 4.120 20 H 0.060 0.940 21 H 0.077 0.923 22 H 0.044 0.956 23 H 0.020 0.980 24 H 0.012 0.988 25 H 0.241 0.759 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 -6.015 -8.481 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.023 4.023 3 O -0.142 6.142 4 N -0.236 5.236 5 C -0.401 4.401 6 H 0.115 0.885 7 C -0.245 4.245 8 N -0.549 5.549 9 Si 0.794 3.206 10 H -0.199 1.199 11 H -0.223 1.223 12 H -0.206 1.206 13 C 0.063 3.937 14 C -0.113 4.113 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.139 4.139 20 H 0.079 0.921 21 H 0.096 0.904 22 H 0.063 0.937 23 H 0.038 0.962 24 H 0.030 0.970 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.158 0.842 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.949 -5.790 -8.346 11.299 hybrid contribution 0.105 -0.318 1.191 1.237 sum 5.054 -6.107 -7.155 10.679 Atomic orbital electron populations 1.21522 0.93463 1.01813 1.01618 1.22538 0.95032 0.88429 0.96342 1.90615 1.05162 1.22398 1.96032 1.46489 0.91356 1.83994 1.01789 1.19698 0.91082 1.45873 0.83447 0.88541 1.25635 0.96391 1.01817 1.00654 1.70357 1.06227 1.53903 1.24442 0.85383 0.77408 0.78268 0.79574 1.19934 1.22271 1.20554 1.20200 0.94056 0.92957 0.86477 1.21025 0.94774 0.98868 0.96643 1.21138 0.99450 0.94281 0.99787 1.21376 0.95869 0.96809 1.00624 1.21405 0.95110 0.99851 0.98708 1.21420 1.00898 0.93278 0.99077 1.21183 0.94939 0.98366 0.99370 0.92127 0.90419 0.93689 0.96158 0.96973 0.94985 0.90958 0.91226 0.86975 0.84214 0.83595 0.84194 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 10.28 71.98 0.74 -4.26 16 2 C 0.06 2.72 6.28 71.98 0.45 3.18 16 3 O -0.14 -7.50 9.19 -38.79 -0.36 -7.86 16 4 N -0.47 -24.66 3.06 -347.18 -1.06 -25.72 16 5 C -0.27 -15.09 9.70 84.03 0.82 -14.27 16 6 H 0.10 5.01 7.79 -2.91 -0.02 4.99 16 7 C -0.05 -2.73 5.49 84.86 0.47 -2.26 16 8 N -0.90 -54.37 9.94 21.65 0.22 -54.16 16 9 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.19 7.80 6.18 85.64 0.53 8.33 16 14 C -0.11 -4.18 5.26 -19.86 -0.10 -4.28 16 15 C -0.13 -4.42 8.93 22.27 0.20 -4.22 16 16 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 17 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 18 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 19 C -0.12 -4.19 9.65 22.27 0.21 -3.97 16 20 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 21 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 22 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.02 0.91 6.47 -2.39 -0.02 0.90 16 24 H 0.01 0.67 7.29 -2.39 -0.02 0.65 16 25 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 26 H 0.07 2.83 8.09 -2.38 -0.02 2.81 16 27 H 0.07 2.72 8.08 -2.39 -0.02 2.70 16 28 H 0.11 3.79 7.26 -2.91 -0.02 3.77 16 29 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 32 H 0.12 3.99 8.02 -2.91 -0.02 3.96 16 Total: -1.00 -66.31 274.89 5.89 -60.42 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.08 Total: 11.93 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 3.98 Total: -32.16 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -0.85 Total: -79.88 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.36 Total: -7.86 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -66.31 5.89 -60.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832791368.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.366 kcal (2) G-P(sol) polarization free energy of solvation -66.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds