Wall clock time and date at job start Sun Mar 29 2020 22:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46299 * 114.00370 * 2 1 4 4 C 1.46898 * 110.99924 * 243.95896 * 3 2 1 5 5 C 1.50700 * 109.47313 * 66.04568 * 4 3 2 6 6 H 1.07994 * 120.00358 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99595 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00162 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99663 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47171 * 59.99825 * 9 7 5 11 11 H 1.48496 * 109.47232 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47002 * 299.99884 * 9 7 5 13 13 C 1.46892 * 111.00202 * 120.00027 * 3 2 1 14 14 C 1.50707 * 109.47255 * 298.95568 * 13 3 2 15 15 C 1.38238 * 119.99792 * 89.99941 * 14 13 3 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.97878 * 14 13 3 20 20 H 1.09001 * 109.46872 * 59.99854 * 1 2 3 21 21 H 1.08991 * 109.47313 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46614 * 299.99866 * 1 2 3 23 23 H 1.09008 * 109.46910 * 186.04583 * 4 3 2 24 24 H 1.09001 * 109.46952 * 306.03989 * 4 3 2 25 25 H 0.96999 * 120.00084 * 179.97438 * 8 7 5 26 26 H 1.09005 * 109.47695 * 178.95849 * 13 3 2 27 27 H 1.09000 * 109.47218 * 58.95161 * 13 3 2 28 28 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 29 29 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 32 32 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0242 1.3365 0.0000 4 6 2.7883 1.5724 -1.2322 5 6 1.8478 1.5988 -2.4094 6 1 0.7884 1.4543 -2.2575 7 6 2.3399 1.8075 -3.6803 8 7 3.6299 1.9840 -3.8653 9 14 1.1741 1.8395 -5.1396 10 1 0.1811 2.9282 -4.9561 11 1 1.9466 2.0781 -6.3851 12 1 0.4679 0.5368 -5.2376 13 6 2.8647 1.5385 1.1876 14 6 2.0200 1.4088 2.4289 15 6 1.8648 0.1753 3.0335 16 6 1.0904 0.0565 4.1724 17 6 0.4717 1.1710 4.7070 18 6 0.6225 2.4034 4.0994 19 6 1.4007 2.5232 2.9632 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8900 23 1 3.3074 2.5283 -1.1604 24 1 3.5166 0.7727 -1.3668 25 1 3.9761 2.1304 -4.7594 26 1 3.3095 2.5331 1.1532 27 1 3.6546 0.7876 1.2057 28 1 2.3486 -0.6954 2.6161 29 1 0.9688 -0.9072 4.6445 30 1 -0.1330 1.0781 5.5971 31 1 0.1356 3.2735 4.5146 32 1 1.5226 3.4869 2.4912 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839546247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:23 Heat of formation + Delta-G solvation = 26.210653 kcal Electronic energy + Delta-G solvation = -14798.087108 eV Core-core repulsion = 12339.588916 eV Total energy + Delta-G solvation = -2458.498192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.00770 -36.32944 -33.46940 -32.67273 -30.64827 -30.58923 -27.13002 -25.56321 -23.91914 -22.30054 -21.39344 -20.56980 -16.88444 -16.22917 -15.67874 -15.11014 -14.89629 -14.60781 -14.14406 -13.91722 -13.17960 -12.89315 -12.69430 -12.27208 -12.25391 -12.11692 -11.44581 -11.11166 -10.91183 -10.78231 -10.65343 -10.56400 -10.00407 -9.28741 -8.99270 -8.67370 -8.48116 -8.43505 -7.59939 -6.04011 -4.04324 1.59126 1.65011 3.34131 3.37521 3.40440 3.64512 4.10072 4.44444 5.06922 5.10821 5.19276 5.32562 5.35272 5.67343 5.76227 5.93774 5.98050 6.13261 6.22426 6.26397 6.30052 6.39620 6.51561 6.69514 6.70846 6.97140 7.09897 7.24145 7.28417 7.68726 7.96755 8.09167 8.41619 9.00628 9.58335 11.07359 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049015 B = 0.006579 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.121902 B = 4255.044693 C = 4386.107108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.263 6.263 3 N -0.352 5.352 4 C 0.179 3.821 5 C -0.501 4.501 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.072 3.928 14 C -0.062 4.062 15 C -0.100 4.100 16 C -0.127 4.127 17 C -0.130 4.130 18 C -0.126 4.126 19 C -0.104 4.104 20 H 0.045 0.955 21 H 0.069 0.931 22 H 0.028 0.972 23 H 0.048 0.952 24 H 0.005 0.995 25 H 0.262 0.738 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 -1.062 13.865 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.266 6.266 3 N -0.122 5.122 4 C 0.054 3.946 5 C -0.540 4.540 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.056 4.056 14 C -0.062 4.062 15 C -0.119 4.119 16 C -0.145 4.145 17 C -0.148 4.148 18 C -0.144 4.144 19 C -0.122 4.122 20 H 0.064 0.936 21 H 0.087 0.913 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.023 0.977 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.628 -0.897 13.709 14.497 hybrid contribution -0.045 -0.423 -0.929 1.021 sum -4.673 -1.321 12.781 13.672 Atomic orbital electron populations 1.22393 0.82455 0.99841 0.99826 1.90572 1.19354 1.19983 1.96706 1.67946 1.34323 1.06962 1.03009 1.20123 0.93062 0.96401 0.85044 1.21009 0.94153 1.48342 0.90456 0.91843 1.24962 0.95223 0.95499 0.98939 1.69935 1.12026 1.49657 1.22443 0.86520 0.80653 0.78599 0.81416 1.20165 1.21305 1.20249 1.21387 0.93658 1.01709 0.88830 1.19846 0.97683 0.93237 0.95468 1.21074 0.98563 0.97165 0.95085 1.21067 0.98376 0.98307 0.96738 1.21043 1.00526 0.93119 1.00151 1.21073 0.99505 0.97400 0.96471 1.21073 0.96838 0.98659 0.95656 0.93606 0.91319 0.95296 0.93452 0.97682 0.92808 0.88897 0.93626 0.86319 0.86618 0.86739 0.86512 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.01 11.46 101.05 1.16 2.17 16 2 O -0.26 -5.90 9.83 -13.92 -0.14 -6.03 16 3 N -0.35 -7.94 4.72 -116.34 -0.55 -8.49 16 4 C 0.18 4.72 5.03 -4.98 -0.03 4.70 16 5 C -0.50 -14.29 9.06 -34.44 -0.31 -14.60 16 6 H 0.06 1.80 6.34 -52.49 -0.33 1.46 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.07 1.34 5.42 -4.98 -0.03 1.32 16 14 C -0.06 -1.01 5.11 -104.62 -0.54 -1.55 16 15 C -0.10 -1.53 9.25 -39.58 -0.37 -1.90 16 16 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 17 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 18 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 19 C -0.10 -1.54 9.70 -39.58 -0.38 -1.92 16 20 H 0.05 0.94 6.73 -51.93 -0.35 0.59 16 21 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 1.28 8.00 -51.92 -0.42 0.87 16 24 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.09 1.60 7.98 -51.93 -0.41 1.19 16 27 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 28 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 279.50 15.07 4.21 4.21 Total: -1.00 -30.75 279.50 -6.99 -37.74 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.45 Total: -1.80 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.78 Total: -16.39 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.19 Total: -34.56 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.14 Total: -6.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.75 -6.99 -37.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839546247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.952 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds