Wall clock time and date at job start Sun Mar 29 2020 22:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46299 * 114.00370 * 2 1 4 4 C 1.46898 * 110.99924 * 243.95896 * 3 2 1 5 5 C 1.50700 * 109.47313 * 66.04568 * 4 3 2 6 6 H 1.07994 * 120.00358 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99595 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00162 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99663 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47171 * 59.99825 * 9 7 5 11 11 H 1.48496 * 109.47232 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47002 * 299.99884 * 9 7 5 13 13 C 1.46892 * 111.00202 * 120.00027 * 3 2 1 14 14 C 1.50707 * 109.47255 * 298.95568 * 13 3 2 15 15 C 1.38238 * 119.99792 * 89.99941 * 14 13 3 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.97878 * 14 13 3 20 20 H 1.09001 * 109.46872 * 59.99854 * 1 2 3 21 21 H 1.08991 * 109.47313 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46614 * 299.99866 * 1 2 3 23 23 H 1.09008 * 109.46910 * 186.04583 * 4 3 2 24 24 H 1.09001 * 109.46952 * 306.03989 * 4 3 2 25 25 H 0.96999 * 120.00084 * 179.97438 * 8 7 5 26 26 H 1.09005 * 109.47695 * 178.95849 * 13 3 2 27 27 H 1.09000 * 109.47218 * 58.95161 * 13 3 2 28 28 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 29 29 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 32 32 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0242 1.3365 0.0000 4 6 2.7883 1.5724 -1.2322 5 6 1.8478 1.5988 -2.4094 6 1 0.7884 1.4543 -2.2575 7 6 2.3399 1.8075 -3.6803 8 7 3.6299 1.9840 -3.8653 9 14 1.1741 1.8395 -5.1396 10 1 0.1811 2.9282 -4.9561 11 1 1.9466 2.0781 -6.3851 12 1 0.4679 0.5368 -5.2376 13 6 2.8647 1.5385 1.1876 14 6 2.0200 1.4088 2.4289 15 6 1.8648 0.1753 3.0335 16 6 1.0904 0.0565 4.1724 17 6 0.4717 1.1710 4.7070 18 6 0.6225 2.4034 4.0994 19 6 1.4007 2.5232 2.9632 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8900 23 1 3.3074 2.5283 -1.1604 24 1 3.5166 0.7727 -1.3668 25 1 3.9761 2.1304 -4.7594 26 1 3.3095 2.5331 1.1532 27 1 3.6546 0.7876 1.2057 28 1 2.3486 -0.6954 2.6161 29 1 0.9688 -0.9072 4.6445 30 1 -0.1330 1.0781 5.5971 31 1 0.1356 3.2735 4.5146 32 1 1.5226 3.4869 2.4912 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839546247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:23 Heat of formation + Delta-G solvation = 7.687074 kcal Electronic energy + Delta-G solvation = -14798.890350 eV Core-core repulsion = 12339.588916 eV Total energy + Delta-G solvation = -2459.301435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15042 -38.01432 -35.33756 -34.47541 -32.14161 -31.70088 -29.00073 -27.08710 -25.69726 -23.37054 -23.20320 -21.90287 -18.74138 -17.68608 -17.28450 -16.90514 -16.25329 -16.04377 -15.72268 -15.47073 -14.43308 -14.39926 -14.22031 -13.93987 -13.84519 -13.48081 -13.20105 -12.79044 -12.67583 -12.59751 -12.12554 -11.83826 -11.73193 -11.34304 -10.72015 -10.60537 -9.74045 -9.68081 -9.38725 -8.22873 -6.32149 0.48255 0.58401 1.40256 1.43770 1.51581 1.98340 2.40641 2.97517 3.11219 3.80216 3.99101 4.22977 4.31672 4.39273 4.46600 4.58867 4.69028 4.75454 4.79375 4.84504 4.88990 5.02698 5.15373 5.17847 5.24094 5.58423 5.64903 5.67338 5.81887 5.89826 6.17775 6.24472 6.37529 6.80111 7.35627 8.88679 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049015 B = 0.006579 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.121902 B = 4255.044693 C = 4386.107108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.278 6.278 3 N -0.354 5.354 4 C 0.191 3.809 5 C -0.521 4.521 6 H 0.062 0.938 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.271 1.271 13 C 0.073 3.927 14 C -0.084 4.084 15 C -0.115 4.115 16 C -0.126 4.126 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.117 4.117 20 H 0.028 0.972 21 H 0.100 0.900 22 H 0.039 0.961 23 H 0.034 0.966 24 H -0.030 1.030 25 H 0.266 0.734 26 H 0.099 0.901 27 H 0.037 0.963 28 H 0.109 0.891 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -1.143 15.116 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.283 6.283 3 N -0.123 5.123 4 C 0.065 3.935 5 C -0.559 4.559 6 H 0.080 0.920 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.795 3.205 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.196 1.196 13 C -0.055 4.055 14 C -0.084 4.084 15 C -0.133 4.133 16 C -0.144 4.144 17 C -0.141 4.141 18 C -0.143 4.143 19 C -0.135 4.135 20 H 0.047 0.953 21 H 0.118 0.882 22 H 0.057 0.943 23 H 0.051 0.949 24 H -0.012 1.012 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.055 0.945 28 H 0.127 0.873 29 H 0.159 0.841 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.683 -0.977 14.985 16.437 hybrid contribution 0.574 -0.421 -1.192 1.388 sum -6.109 -1.397 13.793 15.150 Atomic orbital electron populations 1.22537 0.80740 1.01736 0.99396 1.90546 1.21251 1.19707 1.96756 1.67844 1.34320 1.07460 1.02709 1.19802 0.92318 0.94450 0.86929 1.21317 0.94345 1.48666 0.91574 0.91972 1.25890 0.96929 0.94750 1.01954 1.70061 1.13904 1.50188 1.23313 0.85416 0.78526 0.79002 0.77566 1.19021 1.20568 1.19572 1.21437 0.93683 1.01666 0.88669 1.19672 0.99068 0.94618 0.95051 1.21106 0.99573 0.96362 0.96291 1.21372 0.97289 1.00000 0.95716 1.21479 0.99619 0.92301 1.00663 1.21417 0.98515 0.98909 0.95413 1.21202 0.97411 0.98188 0.96719 0.95327 0.88238 0.94264 0.94854 1.01187 0.92534 0.88323 0.94463 0.87312 0.84079 0.83294 0.83716 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.00 11.46 113.37 1.30 3.30 16 2 O -0.28 -12.65 9.83 -50.16 -0.49 -13.15 16 3 N -0.35 -16.44 4.72 -521.98 -2.46 -18.90 16 4 C 0.19 10.56 5.03 85.56 0.43 10.99 16 5 C -0.52 -30.34 9.06 25.60 0.23 -30.10 16 6 H 0.06 3.56 6.34 -2.91 -0.02 3.54 16 7 C 0.00 0.16 5.46 84.66 0.46 0.62 16 8 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 9 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 C 0.07 2.82 5.42 85.56 0.46 3.28 16 14 C -0.08 -2.73 5.11 -19.86 -0.10 -2.83 16 15 C -0.11 -3.41 9.25 22.27 0.21 -3.20 16 16 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 17 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 18 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 19 C -0.12 -3.32 9.70 22.27 0.22 -3.11 16 20 H 0.03 1.16 6.73 -2.39 -0.02 1.14 16 21 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.03 1.91 8.00 -2.38 -0.02 1.89 16 24 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.10 3.58 7.98 -2.38 -0.02 3.56 16 27 H 0.04 1.46 8.09 -2.39 -0.02 1.44 16 28 H 0.11 3.36 8.06 -2.91 -0.02 3.33 16 29 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.12 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -66.70 279.50 4.32 -62.38 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.08 Total: 7.87 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.88 Total: -28.69 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -2.18 Total: -75.28 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.49 Total: -13.15 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.70 4.32 -62.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839546247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.070 kcal (2) G-P(sol) polarization free energy of solvation -66.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds