Wall clock time and date at job start Sun Mar 29 2020 21:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.09000 * 109.46978 * 115.73612 * 3 2 1 5 5 C 1.52999 * 109.46975 * 235.73378 * 3 2 1 6 6 C 1.52992 * 109.46921 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47689 * 299.99639 * 6 5 3 8 8 H 1.08999 * 109.47014 * 300.00743 * 7 6 5 9 9 N 1.46499 * 109.47493 * 180.02562 * 7 6 5 10 10 C 1.34777 * 119.99665 * 155.28120 * 9 7 6 11 11 O 1.21683 * 120.00206 * 359.72112 * 10 9 7 12 12 C 1.46380 * 119.99540 * 179.72460 * 10 9 7 13 13 H 1.07992 * 119.99955 * 359.97438 * 12 10 9 14 14 C 1.40047 * 119.99660 * 179.97438 * 12 10 9 15 15 N 1.30674 * 120.00002 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99850 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46920 * 60.00120 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47038 * 299.99890 * 16 14 12 20 20 C 1.53008 * 109.46675 * 60.00323 * 7 6 5 21 21 C 1.53002 * 109.47081 * 355.73334 * 3 2 1 22 22 H 4.18736 * 15.03887 * 359.97438 * 4 2 1 23 23 H 1.08999 * 109.46965 * 59.99752 * 5 3 2 24 24 H 1.09006 * 109.47222 * 300.00085 * 5 3 2 25 25 H 1.09009 * 109.47102 * 180.02562 * 6 5 3 26 26 H 1.08999 * 109.47499 * 60.00085 * 6 5 3 27 27 H 0.97001 * 119.99790 * 334.99833 * 9 7 6 28 28 H 0.97004 * 119.99544 * 180.02562 * 15 14 12 29 29 H 1.09000 * 109.47169 * 59.99905 * 20 7 6 30 30 H 1.08995 * 109.47066 * 180.02562 * 20 7 6 31 31 H 1.08999 * 109.47056 * 300.00368 * 21 3 2 32 32 H 1.09000 * 109.46999 * 59.99848 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0092 0.4471 -0.9257 5 6 3.1557 0.8131 1.1921 6 6 4.6856 0.8132 1.1925 7 6 5.1958 -0.6252 1.3002 8 1 4.8323 -1.0713 2.2259 9 7 6.6608 -0.6249 1.3011 10 6 7.3344 -1.6458 1.8673 11 8 6.7258 -2.5652 2.3821 12 6 8.7982 -1.6485 1.8629 13 1 9.3383 -0.8328 1.4057 14 6 9.4982 -2.7091 2.4516 15 7 8.8446 -3.6959 3.0053 16 14 11.3662 -2.7129 2.4454 17 1 11.8660 -1.5117 3.1614 18 1 11.8609 -3.9362 3.1266 19 1 11.8566 -2.6936 1.0438 20 6 4.6862 -1.4376 0.1080 21 6 3.1567 -1.4376 0.1073 22 1 -1.0499 -0.0006 0.0002 23 1 2.7925 0.3667 2.1178 24 1 2.7918 1.8378 1.1157 25 1 5.0487 1.3917 2.0421 26 1 5.0492 1.2593 0.2668 27 1 7.1459 0.1079 0.8907 28 1 9.3295 -4.4303 3.4133 29 1 5.0497 -0.9915 -0.8177 30 1 5.0493 -2.4624 0.1849 31 1 2.7935 -1.8840 1.0330 32 1 2.7936 -2.0164 -0.7420 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874862637.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:16 Heat of formation + Delta-G solvation = -12.648057 kcal Electronic energy + Delta-G solvation = -14652.300608 eV Core-core repulsion = 12192.117375 eV Total energy + Delta-G solvation = -2460.183232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.89528 -36.73869 -33.85603 -32.44202 -31.62398 -30.53690 -28.59761 -25.99472 -22.63196 -22.37717 -19.88457 -19.40971 -18.04952 -17.10695 -15.39678 -15.30367 -14.57792 -14.28519 -14.03695 -13.81908 -13.06336 -12.58537 -12.33843 -12.02697 -11.88137 -11.41717 -11.26562 -10.99300 -10.92042 -10.76469 -10.52477 -10.40626 -10.22990 -10.15111 -9.88116 -9.65214 -8.81974 -7.57166 -7.44286 -6.15247 -4.61027 2.85357 2.87387 3.17374 3.22214 3.24056 4.12321 4.32411 4.61595 4.82507 4.94780 5.03954 5.40122 5.48323 5.52400 5.69400 5.74132 5.77904 5.93606 5.98659 6.05999 6.17309 6.26824 6.33790 6.41579 6.54113 6.82183 6.91629 7.45961 7.64818 7.98141 8.17041 8.37213 9.05499 9.59346 10.63807 10.83073 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.074038 B = 0.005581 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.094011 B = 5015.932838 C = 5184.226735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.167 4.167 3 C 0.017 3.983 4 H 0.090 0.910 5 C -0.104 4.104 6 C -0.124 4.124 7 C 0.155 3.845 8 H 0.075 0.925 9 N -0.764 5.764 10 C 0.555 3.445 11 O -0.580 6.580 12 C -0.547 4.547 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.127 4.127 21 C -0.106 4.106 22 H 0.214 0.786 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.379 0.621 28 H 0.268 0.732 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 8.012 -5.575 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.167 4.167 3 C -0.001 4.001 4 H 0.108 0.892 5 C -0.142 4.142 6 C -0.162 4.162 7 C 0.048 3.952 8 H 0.093 0.907 9 N -0.417 5.417 10 C 0.359 3.641 11 O -0.463 6.463 12 C -0.584 4.584 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.398 5.398 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.166 4.166 21 C -0.144 4.144 22 H 0.231 0.769 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.210 0.790 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.601 7.134 -5.067 12.990 hybrid contribution 0.904 0.346 -0.271 1.006 sum -8.696 7.481 -5.338 12.652 Atomic orbital electron populations 1.24815 0.95840 1.01807 1.01958 1.23295 0.94438 0.99503 0.99484 1.18457 0.83777 0.97897 0.99980 0.89164 1.21483 0.95683 0.99414 0.97611 1.21815 0.94457 0.97752 1.02202 1.20495 0.83420 0.93213 0.98026 0.90715 1.46186 1.03828 1.26736 1.64992 1.18196 0.88276 0.80241 0.77375 1.90592 1.70145 1.36431 1.49142 1.20871 0.89915 1.07705 1.39955 0.91568 1.25694 0.99733 0.94501 0.93217 1.70015 1.36444 1.06790 1.26509 0.86458 0.83289 0.78111 0.79000 1.19331 1.20602 1.19328 1.21963 0.93274 1.02317 0.99043 1.21519 0.96503 0.94011 1.02337 0.76900 0.91407 0.91784 0.91321 0.91822 0.79011 0.92124 0.92469 0.90810 0.91503 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.60 19.25 29.55 0.57 -2.03 16 2 C -0.17 -2.18 12.56 -37.12 -0.47 -2.64 16 3 C 0.02 0.22 2.57 -93.40 -0.24 -0.02 16 4 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 5 C -0.10 -1.32 5.16 -26.74 -0.14 -1.46 16 6 C -0.12 -1.76 5.39 -26.74 -0.14 -1.91 16 7 C 0.15 2.91 2.45 -67.93 -0.17 2.74 16 8 H 0.07 1.63 7.58 -51.93 -0.39 1.23 16 9 N -0.76 -16.85 5.07 -55.21 -0.28 -17.13 16 10 C 0.56 15.72 7.71 -12.98 -0.10 15.62 16 11 O -0.58 -18.69 14.68 5.20 0.08 -18.61 16 12 C -0.55 -15.48 9.54 -35.63 -0.34 -15.82 16 13 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 14 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 15 N -0.77 -23.16 11.83 55.55 0.66 -22.50 16 16 Si 0.91 20.20 29.56 -169.99 -5.02 15.17 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 C -0.13 -2.21 5.49 -26.75 -0.15 -2.35 16 21 C -0.11 -1.54 5.16 -26.75 -0.14 -1.68 16 22 H 0.21 1.64 7.80 -54.09 -0.42 1.22 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.38 7.35 8.58 -40.82 -0.35 7.00 16 28 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 276.62 15.07 4.17 4.17 Total: -1.00 -33.54 276.62 -6.33 -39.86 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.52 Total: 6.21 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.41 Total: -7.17 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.38 Total: -39.63 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.08 Total: -18.61 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.54 -6.33 -39.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874862637.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.216 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds