Wall clock time and date at job start Sun Mar 29 2020 21:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.09000 * 109.46978 * 115.73612 * 3 2 1 5 5 C 1.52999 * 109.46975 * 235.73378 * 3 2 1 6 6 C 1.52992 * 109.46921 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47689 * 299.99639 * 6 5 3 8 8 H 1.08999 * 109.47014 * 300.00743 * 7 6 5 9 9 N 1.46499 * 109.47493 * 180.02562 * 7 6 5 10 10 C 1.34777 * 119.99665 * 155.28120 * 9 7 6 11 11 O 1.21683 * 120.00206 * 359.72112 * 10 9 7 12 12 C 1.46380 * 119.99540 * 179.72460 * 10 9 7 13 13 H 1.07992 * 119.99955 * 359.97438 * 12 10 9 14 14 C 1.40047 * 119.99660 * 179.97438 * 12 10 9 15 15 N 1.30674 * 120.00002 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99850 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46920 * 60.00120 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47038 * 299.99890 * 16 14 12 20 20 C 1.53008 * 109.46675 * 60.00323 * 7 6 5 21 21 C 1.53002 * 109.47081 * 355.73334 * 3 2 1 22 22 H 4.18736 * 15.03887 * 359.97438 * 4 2 1 23 23 H 1.08999 * 109.46965 * 59.99752 * 5 3 2 24 24 H 1.09006 * 109.47222 * 300.00085 * 5 3 2 25 25 H 1.09009 * 109.47102 * 180.02562 * 6 5 3 26 26 H 1.08999 * 109.47499 * 60.00085 * 6 5 3 27 27 H 0.97001 * 119.99790 * 334.99833 * 9 7 6 28 28 H 0.97004 * 119.99544 * 180.02562 * 15 14 12 29 29 H 1.09000 * 109.47169 * 59.99905 * 20 7 6 30 30 H 1.08995 * 109.47066 * 180.02562 * 20 7 6 31 31 H 1.08999 * 109.47056 * 300.00368 * 21 3 2 32 32 H 1.09000 * 109.46999 * 59.99848 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0092 0.4471 -0.9257 5 6 3.1557 0.8131 1.1921 6 6 4.6856 0.8132 1.1925 7 6 5.1958 -0.6252 1.3002 8 1 4.8323 -1.0713 2.2259 9 7 6.6608 -0.6249 1.3011 10 6 7.3344 -1.6458 1.8673 11 8 6.7258 -2.5652 2.3821 12 6 8.7982 -1.6485 1.8629 13 1 9.3383 -0.8328 1.4057 14 6 9.4982 -2.7091 2.4516 15 7 8.8446 -3.6959 3.0053 16 14 11.3662 -2.7129 2.4454 17 1 11.8660 -1.5117 3.1614 18 1 11.8609 -3.9362 3.1266 19 1 11.8566 -2.6936 1.0438 20 6 4.6862 -1.4376 0.1080 21 6 3.1567 -1.4376 0.1073 22 1 -1.0499 -0.0006 0.0002 23 1 2.7925 0.3667 2.1178 24 1 2.7918 1.8378 1.1157 25 1 5.0487 1.3917 2.0421 26 1 5.0492 1.2593 0.2668 27 1 7.1459 0.1079 0.8907 28 1 9.3295 -4.4303 3.4133 29 1 5.0497 -0.9915 -0.8177 30 1 5.0493 -2.4624 0.1849 31 1 2.7935 -1.8840 1.0330 32 1 2.7936 -2.0164 -0.7420 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874862637.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:16 Heat of formation + Delta-G solvation = -35.538282 kcal Electronic energy + Delta-G solvation = -14653.293202 eV Core-core repulsion = 12192.117375 eV Total energy + Delta-G solvation = -2461.175827 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35996 -38.59826 -35.39580 -34.49519 -33.10193 -31.76562 -30.09797 -27.99920 -24.03674 -23.63177 -21.57048 -21.06119 -19.11758 -18.94756 -17.41942 -16.83740 -16.00835 -15.72038 -15.51221 -15.14151 -14.68889 -14.31625 -13.96529 -13.62071 -13.15916 -13.11490 -12.75510 -12.60995 -12.57825 -12.15031 -12.10183 -11.97987 -11.74891 -11.48573 -10.92726 -10.89683 -10.81220 -9.80985 -9.39249 -8.26516 -6.83376 1.40689 1.44437 1.55891 1.92154 1.95801 2.26033 2.50150 3.10246 3.50067 3.62698 3.77440 3.90430 4.23193 4.27408 4.33026 4.46213 4.52865 4.57908 4.81276 4.83434 5.08039 5.11113 5.17410 5.19203 5.29620 5.33362 5.43437 5.48028 5.92077 6.28867 6.36595 6.75077 6.88963 7.62066 8.53765 8.71012 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.074038 B = 0.005581 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.094011 B = 5015.932838 C = 5184.226735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.210 4.210 3 C 0.024 3.976 4 H 0.108 0.892 5 C -0.099 4.099 6 C -0.111 4.111 7 C 0.151 3.849 8 H 0.033 0.967 9 N -0.751 5.751 10 C 0.538 3.462 11 O -0.632 6.632 12 C -0.576 4.576 13 H 0.088 0.912 14 C 0.028 3.972 15 N -0.824 5.824 16 Si 0.998 3.002 17 H -0.254 1.254 18 H -0.276 1.276 19 H -0.254 1.254 20 C -0.119 4.119 21 C -0.098 4.098 22 H 0.246 0.754 23 H 0.054 0.946 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.395 0.605 28 H 0.273 0.727 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.048 0.952 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.037 10.115 -6.895 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.210 4.210 3 C 0.006 3.994 4 H 0.126 0.874 5 C -0.137 4.137 6 C -0.149 4.149 7 C 0.045 3.955 8 H 0.052 0.948 9 N -0.404 5.404 10 C 0.342 3.658 11 O -0.520 6.520 12 C -0.613 4.613 13 H 0.106 0.894 14 C -0.187 4.187 15 N -0.454 5.454 16 Si 0.817 3.183 17 H -0.178 1.178 18 H -0.201 1.201 19 H -0.178 1.178 20 C -0.158 4.158 21 C -0.136 4.136 22 H 0.263 0.737 23 H 0.073 0.927 24 H 0.109 0.891 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.228 0.772 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.484 9.299 -6.421 14.753 hybrid contribution 0.742 -0.300 0.129 0.811 sum -8.742 8.999 -6.292 14.035 Atomic orbital electron populations 1.25672 0.96730 0.99655 1.00108 1.23434 0.94910 1.01442 1.01258 1.18330 0.84330 0.95993 1.00717 0.87384 1.21455 0.94179 1.00884 0.97135 1.21718 0.95610 0.93931 1.03630 1.20677 0.81362 0.96664 0.96791 0.94836 1.45870 1.05412 1.25557 1.63592 1.18592 0.89098 0.80763 0.77349 1.90547 1.71205 1.38741 1.51469 1.21446 0.90418 1.08881 1.40560 0.89420 1.26978 1.06327 0.93451 0.91903 1.70199 1.39462 1.07948 1.27753 0.85076 0.74793 0.78649 0.79776 1.17797 1.20059 1.17810 1.21822 0.95457 0.99316 0.99171 1.21419 0.94112 0.96176 1.01931 0.73736 0.92743 0.89075 0.91088 0.89237 0.77153 0.91696 0.90429 0.95521 0.93309 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.08 19.25 74.32 1.43 -2.65 16 2 C -0.21 -5.01 12.56 31.13 0.39 -4.61 16 3 C 0.02 0.58 2.57 -12.60 -0.03 0.54 16 4 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 5 C -0.10 -2.32 5.16 30.59 0.16 -2.16 16 6 C -0.11 -2.97 5.39 30.59 0.16 -2.81 16 7 C 0.15 5.80 2.45 44.99 0.11 5.91 16 8 H 0.03 1.56 7.58 -2.39 -0.02 1.54 16 9 N -0.75 -33.76 5.07 -446.81 -2.27 -36.02 16 10 C 0.54 31.64 7.71 86.36 0.67 32.31 16 11 O -0.63 -43.17 14.68 -4.29 -0.06 -43.23 16 12 C -0.58 -33.02 9.54 24.83 0.24 -32.78 16 13 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 14 C 0.03 1.59 5.50 85.30 0.47 2.06 16 15 N -0.82 -51.36 11.83 21.84 0.26 -51.10 16 16 Si 1.00 41.32 29.56 68.60 2.03 43.35 16 17 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 18 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 19 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 20 C -0.12 -4.24 5.49 30.58 0.17 -4.07 16 21 C -0.10 -2.87 5.16 30.58 0.16 -2.72 16 22 H 0.25 2.82 7.80 -4.42 -0.03 2.79 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 25 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 27 H 0.39 15.04 8.58 -92.71 -0.80 14.25 16 28 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -76.93 276.62 4.18 -72.75 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.31 Total: 25.23 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 3.92 Total: -10.98 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.01 Total: -87.12 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.06 Total: -43.23 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -76.93 4.18 -72.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874862637.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.215 kcal (2) G-P(sol) polarization free energy of solvation -76.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds