Wall clock time and date at job start Sun Mar 29 2020 21:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38294 * 119.97461 * 2 1 4 4 C 1.38244 * 120.11199 * 180.30239 * 3 2 1 5 5 C 1.38171 * 120.05436 * 359.44067 * 4 3 2 6 6 C 1.38706 * 119.94402 * 0.28089 * 5 4 3 7 7 O 1.35899 * 120.05784 * 179.97438 * 6 5 4 8 8 C 1.38125 * 119.97454 * 179.74555 * 2 1 3 9 9 C 1.50703 * 120.02166 * 0.02562 * 8 2 1 10 10 N 1.46906 * 109.46793 * 269.97369 * 9 8 2 11 11 C 1.46902 * 110.99602 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.46582 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00273 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99787 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00246 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99939 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47192 * 60.00554 * 16 14 12 18 18 H 1.48503 * 109.46993 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47375 * 300.00281 * 16 14 12 20 20 H 1.09000 * 109.47133 * 270.25376 * 1 2 3 21 21 H 1.09003 * 109.46925 * 30.25419 * 1 2 3 22 22 H 1.09004 * 109.47278 * 150.24953 * 1 2 3 23 23 H 1.08001 * 119.94303 * 0.03884 * 3 2 1 24 24 H 1.08002 * 119.97539 * 179.72689 * 4 3 2 25 25 H 1.07999 * 120.02791 * 180.25957 * 5 4 3 26 26 H 0.96706 * 114.00065 * 89.99795 * 7 6 5 27 27 H 1.09000 * 109.47289 * 29.97681 * 9 8 2 28 28 H 1.09007 * 109.47128 * 149.97800 * 9 8 2 29 29 H 1.00903 * 111.00069 * 303.95741 * 10 9 8 30 30 H 1.08993 * 109.47179 * 299.99773 * 11 10 9 31 31 H 1.09002 * 109.47171 * 60.00940 * 11 10 9 32 32 H 0.96998 * 120.00555 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0063 5 6 4.2752 0.0071 -0.0010 6 6 3.5845 -1.1958 0.0049 7 8 4.2657 -2.3718 0.0096 8 6 2.1970 -1.1965 0.0053 9 6 1.4434 -2.5016 0.0105 10 7 1.1986 -2.9200 1.3973 11 6 0.4648 -4.1919 1.4415 12 6 0.2333 -4.5884 2.8769 13 1 0.5947 -3.9584 3.6762 14 6 -0.4409 -5.7550 3.1696 15 7 -0.8814 -6.5219 2.1963 16 14 -0.7286 -6.2461 4.9488 17 1 -1.5219 -5.1926 5.6311 18 1 -1.4703 -7.5319 4.9936 19 1 0.5782 -6.4048 5.6360 20 1 -0.3633 0.0046 1.0277 21 1 -0.3633 0.8877 -0.5178 22 1 -0.3634 -0.8922 -0.5100 23 1 1.6565 2.1325 0.0006 24 1 4.1176 2.1381 -0.0108 25 1 5.3552 0.0102 -0.0017 26 1 4.4635 -2.7082 0.8944 27 1 0.4910 -2.3733 -0.5039 28 1 2.0325 -3.2634 -0.5002 29 1 2.0631 -2.9834 1.9138 30 1 -0.4943 -4.0757 0.9371 31 1 1.0475 -4.9652 0.9409 32 1 -1.3560 -7.3424 2.4022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877483799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:32 Heat of formation + Delta-G solvation = -28.138160 kcal Electronic energy + Delta-G solvation = -14565.284288 eV Core-core repulsion = 12104.429355 eV Total energy + Delta-G solvation = -2460.854933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.85798 -36.68834 -35.34821 -32.90049 -31.89373 -30.05095 -27.21839 -26.48179 -24.23534 -21.76355 -21.43817 -20.51611 -17.78570 -16.62394 -16.05011 -15.74149 -14.87238 -14.67706 -14.12242 -13.80822 -13.44760 -13.00319 -12.84256 -12.38676 -12.22189 -11.83038 -11.58027 -11.38872 -11.10692 -11.00393 -10.75243 -10.64992 -10.19215 -9.87872 -9.22742 -8.51872 -8.43120 -8.38624 -7.29852 -6.03960 -4.06378 1.39832 1.48771 3.32800 3.36830 3.39781 3.73628 4.40439 4.43131 4.97822 4.99593 5.13019 5.31686 5.33878 5.51158 5.61939 5.70159 5.85845 5.97422 6.08053 6.13341 6.28941 6.47595 6.50882 6.58651 6.86889 7.00722 7.23236 7.40492 7.76086 7.82448 8.10845 8.35785 8.57582 9.02435 9.58527 11.07019 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039660 B = 0.006156 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.829564 B = 4546.963858 C = 4778.584322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.135 4.135 4 C -0.110 4.110 5 C -0.157 4.157 6 C 0.110 3.890 7 O -0.498 6.498 8 C -0.095 4.095 9 C 0.092 3.908 10 N -0.679 5.679 11 C 0.194 3.806 12 C -0.515 4.515 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 H 0.079 0.921 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.390 0.610 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.324 0.676 30 H 0.028 0.972 31 H -0.013 1.013 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 13.091 -4.183 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.153 4.153 4 C -0.128 4.128 5 C -0.175 4.175 6 C 0.065 3.935 7 O -0.309 6.309 8 C -0.096 4.096 9 C -0.037 4.037 10 N -0.309 5.309 11 C 0.068 3.932 12 C -0.554 4.554 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.098 0.902 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.246 0.754 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.140 0.860 30 H 0.046 0.954 31 H 0.005 0.995 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.491 13.326 -4.770 15.571 hybrid contribution 0.626 -1.067 1.173 1.705 sum 7.117 12.259 -3.597 14.625 Atomic orbital electron populations 1.20838 0.90737 1.02252 1.03240 1.19705 0.96442 0.91801 0.97110 1.21012 0.94140 0.97469 1.02683 1.20899 0.94189 0.97308 1.00405 1.21295 1.00039 0.92013 1.04167 1.18355 0.89486 0.85225 1.00416 1.84770 1.76032 1.36488 1.33562 1.20218 0.92622 0.96115 1.00608 1.20835 0.98220 0.91485 0.93124 1.60768 1.25000 1.36065 1.09087 1.19572 0.93161 0.83218 0.97287 1.21131 1.36283 1.05889 0.92076 0.92056 1.24986 0.95683 0.96321 0.97519 1.69950 1.38401 1.13770 1.31564 0.86539 0.78309 0.77656 0.84751 1.20162 1.21320 1.20288 0.90201 0.92291 0.90852 0.86146 0.86124 0.85955 0.75396 0.90535 0.94722 0.85977 0.95363 0.99498 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.60 36.00 0.35 -1.23 16 2 C -0.05 -0.74 5.88 -104.65 -0.62 -1.36 16 3 C -0.13 -1.72 9.70 -39.56 -0.38 -2.10 16 4 C -0.11 -1.32 10.04 -39.60 -0.40 -1.71 16 5 C -0.16 -2.06 9.99 -39.43 -0.39 -2.45 16 6 C 0.11 1.68 6.68 -39.22 -0.26 1.42 16 7 O -0.50 -7.38 12.55 -19.42 -0.24 -7.63 16 8 C -0.09 -1.56 5.41 -104.47 -0.56 -2.12 16 9 C 0.09 1.73 5.18 -4.97 -0.03 1.70 16 10 N -0.68 -14.58 6.48 -116.33 -0.75 -15.34 16 11 C 0.19 5.09 5.44 -4.98 -0.03 5.07 16 12 C -0.52 -14.57 9.32 -34.44 -0.32 -14.89 16 13 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 16 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 21 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 22 H 0.07 1.07 5.94 -51.93 -0.31 0.76 16 23 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 24 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 25 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 26 H 0.39 4.38 9.06 45.56 0.41 4.80 16 27 H 0.08 1.43 5.94 -51.93 -0.31 1.12 16 28 H 0.03 0.68 7.53 -51.93 -0.39 0.29 16 29 H 0.32 6.65 8.71 -39.29 -0.34 6.31 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 275.87 15.07 4.16 4.16 Total: -1.00 -31.23 275.87 -7.31 -38.54 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.44 Total: 5.90 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.74 Total: -16.16 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.02 Total: -41.46 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.24 Total: -7.63 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.23 -7.31 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.402 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds