Wall clock time and date at job start Sun Mar 29 2020 21:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38294 * 119.97461 * 2 1 4 4 C 1.38244 * 120.11199 * 180.30239 * 3 2 1 5 5 C 1.38171 * 120.05436 * 359.44067 * 4 3 2 6 6 C 1.38706 * 119.94402 * 0.28089 * 5 4 3 7 7 O 1.35899 * 120.05784 * 179.97438 * 6 5 4 8 8 C 1.38125 * 119.97454 * 179.74555 * 2 1 3 9 9 C 1.50703 * 120.02166 * 0.02562 * 8 2 1 10 10 N 1.46906 * 109.46793 * 269.97369 * 9 8 2 11 11 C 1.46902 * 110.99602 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.46582 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00273 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99787 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00246 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99939 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47192 * 60.00554 * 16 14 12 18 18 H 1.48503 * 109.46993 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47375 * 300.00281 * 16 14 12 20 20 H 1.09000 * 109.47133 * 270.25376 * 1 2 3 21 21 H 1.09003 * 109.46925 * 30.25419 * 1 2 3 22 22 H 1.09004 * 109.47278 * 150.24953 * 1 2 3 23 23 H 1.08001 * 119.94303 * 0.03884 * 3 2 1 24 24 H 1.08002 * 119.97539 * 179.72689 * 4 3 2 25 25 H 1.07999 * 120.02791 * 180.25957 * 5 4 3 26 26 H 0.96706 * 114.00065 * 89.99795 * 7 6 5 27 27 H 1.09000 * 109.47289 * 29.97681 * 9 8 2 28 28 H 1.09007 * 109.47128 * 149.97800 * 9 8 2 29 29 H 1.00903 * 111.00069 * 303.95741 * 10 9 8 30 30 H 1.08993 * 109.47179 * 299.99773 * 11 10 9 31 31 H 1.09002 * 109.47171 * 60.00940 * 11 10 9 32 32 H 0.96998 * 120.00555 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0063 5 6 4.2752 0.0071 -0.0010 6 6 3.5845 -1.1958 0.0049 7 8 4.2657 -2.3718 0.0096 8 6 2.1970 -1.1965 0.0053 9 6 1.4434 -2.5016 0.0105 10 7 1.1986 -2.9200 1.3973 11 6 0.4648 -4.1919 1.4415 12 6 0.2333 -4.5884 2.8769 13 1 0.5947 -3.9584 3.6762 14 6 -0.4409 -5.7550 3.1696 15 7 -0.8814 -6.5219 2.1963 16 14 -0.7286 -6.2461 4.9488 17 1 -1.5219 -5.1926 5.6311 18 1 -1.4703 -7.5319 4.9936 19 1 0.5782 -6.4048 5.6360 20 1 -0.3633 0.0046 1.0277 21 1 -0.3633 0.8877 -0.5178 22 1 -0.3634 -0.8922 -0.5100 23 1 1.6565 2.1325 0.0006 24 1 4.1176 2.1381 -0.0108 25 1 5.3552 0.0102 -0.0017 26 1 4.4635 -2.7082 0.8944 27 1 0.4910 -2.3733 -0.5039 28 1 2.0325 -3.2634 -0.5002 29 1 2.0631 -2.9834 1.9138 30 1 -0.4943 -4.0757 0.9371 31 1 1.0475 -4.9652 0.9409 32 1 -1.3560 -7.3424 2.4022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877483799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:32 Heat of formation + Delta-G solvation = -50.830691 kcal Electronic energy + Delta-G solvation = -14566.268310 eV Core-core repulsion = 12104.429355 eV Total energy + Delta-G solvation = -2461.838955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.98040 -37.79826 -37.07674 -34.76562 -33.30034 -31.38750 -28.87309 -27.76486 -25.86247 -23.53893 -22.79011 -21.71560 -18.90964 -18.62475 -17.39003 -16.96026 -16.56635 -16.14476 -15.67848 -15.29214 -14.80364 -14.38418 -14.22555 -13.88509 -13.59244 -13.31208 -13.12194 -12.73883 -12.69187 -12.54003 -12.31903 -12.21521 -12.00603 -11.41364 -11.15952 -10.66962 -9.63021 -9.43877 -9.13616 -8.23172 -6.35235 0.33290 0.41160 1.41229 1.44877 1.53037 2.39475 2.68354 3.10007 3.34542 3.66097 3.87551 4.00306 4.15989 4.24701 4.44254 4.61265 4.72471 4.77127 4.90556 4.95220 5.04085 5.08030 5.22254 5.35125 5.48864 5.53851 5.58523 5.74840 5.97098 6.01092 6.38753 6.64889 6.79638 6.86023 7.35816 8.88267 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039660 B = 0.006156 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.829564 B = 4546.963858 C = 4778.584322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.063 4.063 3 C -0.133 4.133 4 C -0.098 4.098 5 C -0.158 4.158 6 C 0.096 3.904 7 O -0.512 6.512 8 C -0.123 4.123 9 C 0.102 3.898 10 N -0.671 5.671 11 C 0.209 3.791 12 C -0.536 4.536 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.975 3.025 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.265 1.265 20 H 0.068 0.932 21 H 0.088 0.912 22 H 0.054 0.946 23 H 0.151 0.849 24 H 0.159 0.841 25 H 0.144 0.856 26 H 0.402 0.598 27 H 0.070 0.930 28 H 0.019 0.981 29 H 0.331 0.669 30 H 0.000 1.000 31 H -0.041 1.041 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.129 15.166 -3.144 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.064 4.064 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.177 4.177 6 C 0.051 3.949 7 O -0.324 6.324 8 C -0.124 4.124 9 C -0.027 4.027 10 N -0.301 5.301 11 C 0.082 3.918 12 C -0.574 4.574 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.799 3.201 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.190 1.190 20 H 0.087 0.913 21 H 0.107 0.893 22 H 0.073 0.927 23 H 0.168 0.832 24 H 0.176 0.824 25 H 0.162 0.838 26 H 0.260 0.740 27 H 0.088 0.912 28 H 0.037 0.963 29 H 0.148 0.852 30 H 0.018 0.982 31 H -0.024 1.024 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.420 15.421 -3.730 17.515 hybrid contribution 0.390 -1.638 0.779 1.856 sum 7.810 13.783 -2.950 16.114 Atomic orbital electron populations 1.20818 0.90559 1.02824 1.02656 1.19907 0.96855 0.92187 0.97438 1.21361 0.94775 0.97596 1.01374 1.21368 0.94068 0.98334 0.97860 1.21578 1.01227 0.91467 1.03399 1.18576 0.89201 0.86116 1.00994 1.84730 1.75951 1.36913 1.34850 1.20074 0.93271 0.95181 1.03898 1.20702 0.98149 0.92832 0.91039 1.60637 1.25224 1.33041 1.11213 1.19214 0.91978 0.84484 0.96149 1.21479 1.36675 1.06436 0.92815 0.91652 1.25972 0.95057 0.96131 1.02503 1.70088 1.38976 1.14256 1.34141 0.85354 0.78672 0.77401 0.78670 1.19269 1.20789 1.19028 0.91319 0.89326 0.92684 0.83173 0.82386 0.83837 0.74024 0.91184 0.96323 0.85233 0.98159 1.02359 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.03 9.60 71.23 0.68 -2.34 16 2 C -0.06 -1.80 5.88 -19.88 -0.12 -1.92 16 3 C -0.13 -2.95 9.70 22.28 0.22 -2.73 16 4 C -0.10 -1.97 10.04 22.26 0.22 -1.74 16 5 C -0.16 -3.74 9.99 22.37 0.22 -3.51 16 6 C 0.10 2.86 6.68 22.50 0.15 3.01 16 7 O -0.51 -15.19 12.55 -92.41 -1.16 -16.35 16 8 C -0.12 -4.06 5.41 -19.77 -0.11 -4.16 16 9 C 0.10 3.98 5.18 85.56 0.44 4.42 16 10 N -0.67 -29.86 6.48 -521.96 -3.38 -33.25 16 11 C 0.21 11.51 5.44 85.56 0.47 11.98 16 12 C -0.54 -30.87 9.32 25.60 0.24 -30.63 16 13 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 14 C 0.00 0.10 5.46 84.66 0.46 0.56 16 15 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 16 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 21 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 22 H 0.05 1.66 5.94 -2.38 -0.01 1.64 16 23 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 24 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 25 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 26 H 0.40 9.10 9.06 -74.05 -0.67 8.43 16 27 H 0.07 2.79 5.94 -2.39 -0.01 2.77 16 28 H 0.02 0.78 7.53 -2.38 -0.02 0.76 16 29 H 0.33 13.92 8.71 -89.69 -0.78 13.14 16 30 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 31 H -0.04 -2.45 8.14 -2.39 -0.02 -2.47 16 32 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -67.99 275.87 0.33 -67.66 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.32 Total: 19.44 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 2.88 Total: -27.08 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -3.10 Total: -90.06 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -1.16 Total: -16.35 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -67.99 0.33 -67.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.829 kcal (2) G-P(sol) polarization free energy of solvation -67.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds