Wall clock time and date at job start Sun Mar 29 2020 22:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.50704 * 109.46822 * 175.00037 * 4 2 1 6 6 C 1.38392 * 119.99771 * 124.72439 * 5 4 2 7 7 N 1.32130 * 119.99237 * 179.77925 * 6 5 4 8 8 C 1.32145 * 120.00308 * 0.49365 * 7 6 5 9 9 C 1.38354 * 120.00232 * 359.73794 * 8 7 6 10 10 N 1.32126 * 119.99996 * 304.99929 * 5 4 2 11 11 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 12 12 C 1.46901 * 110.99793 * 275.00325 * 11 2 1 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 2 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 22 22 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 23 23 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 25 25 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 26 26 H 1.08001 * 119.99986 * 0.02562 * 6 5 4 27 27 H 1.08002 * 120.00422 * 179.75790 * 8 7 6 28 28 H 1.07990 * 119.99844 * 180.02562 * 9 8 7 29 29 H 1.00898 * 110.99995 * 38.95403 * 11 2 1 30 30 H 1.09002 * 109.47401 * 59.99808 * 12 11 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 12 11 2 32 32 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 6 4.3133 -1.7600 -1.4073 7 7 5.6299 -1.6664 -1.4673 8 6 6.2105 -0.4800 -1.4270 9 6 5.4396 0.6645 -1.3275 10 7 4.1225 0.5713 -1.2723 11 7 2.0196 -0.6925 1.1995 12 6 2.0823 0.2227 2.3469 13 6 2.5872 -0.5217 3.5561 14 1 2.8369 -1.5696 3.4797 15 6 2.7313 0.1354 4.7596 16 7 2.4276 1.4116 4.8525 17 14 3.3577 -0.7871 6.2582 18 1 4.8388 -0.6938 6.3135 19 1 2.7778 -0.1875 7.4868 20 1 2.9548 -2.2133 6.1658 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7516 -1.7715 -1.2055 25 1 1.6054 -0.2618 -2.1369 26 1 3.8389 -2.7298 -1.4362 27 1 7.2869 -0.4037 -1.4721 28 1 5.9141 1.6340 -1.2950 29 1 1.4495 -1.4979 1.4101 30 1 1.0869 0.6164 2.5525 31 1 2.7587 1.0463 2.1182 32 1 2.5287 1.8738 5.6993 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877484040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:20 Heat of formation + Delta-G solvation = 35.308343 kcal Electronic energy + Delta-G solvation = -14663.199035 eV Core-core repulsion = 12237.388100 eV Total energy + Delta-G solvation = -2425.810935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.73127 -36.79055 -33.99445 -33.05098 -31.90192 -29.86295 -27.02167 -25.91472 -24.32061 -22.85454 -21.65439 -20.11108 -17.18983 -16.73517 -16.36596 -15.67680 -14.95097 -14.54044 -14.06464 -14.02121 -13.37060 -13.18342 -12.49999 -12.01164 -11.95677 -11.78592 -11.37972 -11.25603 -11.19447 -10.83058 -10.69165 -10.57652 -10.36656 -9.86618 -9.19540 -8.83378 -8.74101 -8.47036 -7.25441 -6.01822 -4.03565 1.11829 1.48169 3.32217 3.37873 3.41657 3.99991 4.36748 4.43804 4.57498 4.78138 5.01137 5.15244 5.33842 5.35447 5.52387 5.60987 5.69188 5.79890 5.86869 5.94189 6.00031 6.30229 6.46144 6.63582 6.70332 7.30532 7.47415 7.59107 7.79917 8.11421 8.15390 8.42716 8.64653 9.05908 9.61135 11.09131 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.007927 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.577034 B = 3531.400568 C = 4155.403432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.082 0.918 4 C -0.057 4.057 5 C 0.121 3.879 6 C 0.054 3.946 7 N -0.441 5.441 8 C 0.028 3.972 9 C 0.056 3.944 10 N -0.435 5.435 11 N -0.685 5.685 12 C 0.199 3.801 13 C -0.513 4.513 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.163 0.837 27 H 0.162 0.838 28 H 0.163 0.837 29 H 0.327 0.673 30 H -0.013 1.013 31 H 0.025 0.975 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -3.128 -13.286 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.025 4.025 3 H 0.100 0.900 4 C -0.096 4.096 5 C -0.020 4.020 6 C -0.106 4.106 7 N -0.155 5.155 8 C -0.131 4.131 9 C -0.104 4.104 10 N -0.150 5.150 11 N -0.315 5.315 12 C 0.072 3.928 13 C -0.552 4.552 14 H 0.078 0.922 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.180 0.820 27 H 0.179 0.821 28 H 0.180 0.820 29 H 0.144 0.856 30 H 0.005 0.995 31 H 0.043 0.957 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.993 -2.890 -13.312 13.767 hybrid contribution -0.484 -0.199 1.291 1.393 sum 1.510 -3.089 -12.021 12.503 Atomic orbital electron populations 1.22491 0.97863 1.01507 1.01873 1.21475 0.91670 0.98681 0.90680 0.89985 1.20619 0.88008 1.01991 0.98974 1.22059 0.98104 0.89267 0.92537 1.23478 0.89989 0.99799 0.97366 1.68345 1.11527 1.27082 1.08579 1.23570 1.01613 0.89128 0.98783 1.23661 0.90436 1.00221 0.96057 1.68201 1.11233 1.27057 1.08510 1.60752 1.55268 1.10492 1.04973 1.19512 0.95147 0.91684 0.86460 1.21194 1.43476 0.96835 0.93702 0.92166 1.24982 0.95684 0.94927 0.98975 1.69966 1.48871 1.08972 1.25862 0.86513 0.79000 0.79892 0.82086 1.20694 1.21270 1.19863 0.92188 0.93003 0.92897 0.90223 0.90231 0.82004 0.82062 0.81955 0.85597 0.99547 0.95688 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 9.16 37.15 0.34 -2.34 16 2 C 0.09 1.50 2.52 -67.71 -0.17 1.33 16 3 H 0.08 1.63 7.47 -51.93 -0.39 1.24 16 4 C -0.06 -0.80 5.31 -27.88 -0.15 -0.95 16 5 C 0.12 1.92 5.91 -82.41 -0.49 1.44 16 6 C 0.05 0.82 10.85 -17.37 -0.19 0.63 16 7 N -0.44 -6.92 10.50 -13.05 -0.14 -7.06 16 8 C 0.03 0.39 11.22 -17.37 -0.20 0.20 16 9 C 0.06 0.81 11.23 -17.37 -0.19 0.61 16 10 N -0.43 -7.36 9.96 -9.28 -0.09 -7.45 16 11 N -0.69 -14.48 5.95 -107.99 -0.64 -15.12 16 12 C 0.20 5.27 5.24 -4.97 -0.03 5.24 16 13 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.30 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 17 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.06 1.03 7.45 -51.93 -0.39 0.64 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 24 H 0.08 0.96 7.89 -51.93 -0.41 0.55 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.16 2.01 7.95 -52.49 -0.42 1.59 16 27 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.33 6.57 8.46 -39.29 -0.33 6.24 16 30 H -0.01 -0.37 7.44 -51.93 -0.39 -0.76 16 31 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 278.13 15.07 4.19 4.19 Total: -1.00 -32.73 278.13 -6.85 -39.58 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.40 Total: 2.71 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.49 Total: -7.44 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.14 Total: -56.14 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.73 -6.85 -39.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877484040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.893 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds