Wall clock time and date at job start Sun Mar 29 2020 22:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.50704 * 109.46822 * 175.00037 * 4 2 1 6 6 C 1.38392 * 119.99771 * 124.72439 * 5 4 2 7 7 N 1.32130 * 119.99237 * 179.77925 * 6 5 4 8 8 C 1.32145 * 120.00308 * 0.49365 * 7 6 5 9 9 C 1.38354 * 120.00232 * 359.73794 * 8 7 6 10 10 N 1.32126 * 119.99996 * 304.99929 * 5 4 2 11 11 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 12 12 C 1.46901 * 110.99793 * 275.00325 * 11 2 1 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 2 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 22 22 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 23 23 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 25 25 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 26 26 H 1.08001 * 119.99986 * 0.02562 * 6 5 4 27 27 H 1.08002 * 120.00422 * 179.75790 * 8 7 6 28 28 H 1.07990 * 119.99844 * 180.02562 * 9 8 7 29 29 H 1.00898 * 110.99995 * 38.95403 * 11 2 1 30 30 H 1.09002 * 109.47401 * 59.99808 * 12 11 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 12 11 2 32 32 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 6 4.3133 -1.7600 -1.4073 7 7 5.6299 -1.6664 -1.4673 8 6 6.2105 -0.4800 -1.4270 9 6 5.4396 0.6645 -1.3275 10 7 4.1225 0.5713 -1.2723 11 7 2.0196 -0.6925 1.1995 12 6 2.0823 0.2227 2.3469 13 6 2.5872 -0.5217 3.5561 14 1 2.8369 -1.5696 3.4797 15 6 2.7313 0.1354 4.7596 16 7 2.4276 1.4116 4.8525 17 14 3.3577 -0.7871 6.2582 18 1 4.8388 -0.6938 6.3135 19 1 2.7778 -0.1875 7.4868 20 1 2.9548 -2.2133 6.1658 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7516 -1.7715 -1.2055 25 1 1.6054 -0.2618 -2.1369 26 1 3.8389 -2.7298 -1.4362 27 1 7.2869 -0.4037 -1.4721 28 1 5.9141 1.6340 -1.2950 29 1 1.4495 -1.4979 1.4101 30 1 1.0869 0.6164 2.5525 31 1 2.7587 1.0463 2.1182 32 1 2.5287 1.8738 5.6993 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877484040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:20 Heat of formation + Delta-G solvation = 11.130235 kcal Electronic energy + Delta-G solvation = -14664.247476 eV Core-core repulsion = 12237.388100 eV Total energy + Delta-G solvation = -2426.859377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.85860 -38.30785 -35.42156 -34.81295 -33.36454 -31.45265 -28.19578 -27.92581 -25.46401 -24.26772 -23.50266 -21.53678 -18.59898 -18.29968 -17.76080 -17.01078 -16.66561 -15.95199 -15.62827 -15.54196 -14.85136 -14.54173 -13.96620 -13.66114 -13.47849 -13.17116 -13.04170 -12.72516 -12.61013 -12.44093 -12.39105 -12.06744 -11.85850 -11.70854 -11.28330 -10.69080 -9.97112 -9.88386 -9.02776 -8.24334 -6.35657 0.00850 0.33107 1.37512 1.39336 1.50603 2.37132 2.87423 3.08521 3.30857 3.50875 3.62444 3.71730 3.93617 4.17505 4.35077 4.45217 4.49155 4.60018 4.69504 4.83656 4.89455 5.01517 5.04513 5.20042 5.32251 5.37652 5.58606 5.62947 6.02522 6.47274 6.48337 6.75573 6.94125 6.99033 7.35511 8.87056 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.007927 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.577034 B = 3531.400568 C = 4155.403432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.086 3.914 3 H 0.048 0.952 4 C -0.048 4.048 5 C 0.100 3.900 6 C 0.046 3.954 7 N -0.462 5.462 8 C 0.029 3.971 9 C 0.043 3.957 10 N -0.469 5.469 11 N -0.681 5.681 12 C 0.220 3.780 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.971 3.029 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.261 1.261 21 H 0.030 0.970 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.186 0.814 27 H 0.196 0.804 28 H 0.188 0.812 29 H 0.336 0.664 30 H -0.039 1.039 31 H -0.016 1.016 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -4.692 -13.692 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 H 0.067 0.933 4 C -0.086 4.086 5 C -0.040 4.040 6 C -0.114 4.114 7 N -0.176 5.176 8 C -0.130 4.130 9 C -0.117 4.117 10 N -0.184 5.184 11 N -0.312 5.312 12 C 0.092 3.908 13 C -0.572 4.572 14 H 0.080 0.920 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.795 3.205 18 H -0.202 1.202 19 H -0.205 1.205 20 H -0.185 1.185 21 H 0.049 0.951 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.124 0.876 25 H 0.122 0.878 26 H 0.203 0.797 27 H 0.213 0.787 28 H 0.205 0.795 29 H 0.154 0.846 30 H -0.021 1.021 31 H 0.002 0.998 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.269 -4.472 -13.746 14.633 hybrid contribution -0.543 0.345 1.350 1.496 sum 1.726 -4.126 -12.396 13.178 Atomic orbital electron populations 1.22382 0.95785 1.02920 1.01775 1.21500 0.93340 0.97127 0.90492 0.93314 1.20611 0.87134 1.03260 0.97639 1.22367 0.99039 0.89351 0.93237 1.23872 0.90036 1.00604 0.96856 1.68402 1.11929 1.27964 1.09340 1.24134 1.03226 0.88403 0.97222 1.24174 0.89976 1.01837 0.95665 1.68188 1.12681 1.28095 1.09480 1.60611 1.56419 1.09954 1.04212 1.19043 0.92471 0.91224 0.88086 1.21558 1.43779 0.97100 0.94804 0.91951 1.25957 0.95630 0.95791 1.02413 1.70101 1.49713 1.10692 1.26899 0.85365 0.78337 0.78956 0.77846 1.20188 1.20489 1.18538 0.95110 0.90252 0.90681 0.87602 0.87846 0.79666 0.78683 0.79483 0.84649 1.02098 0.99763 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.91 9.16 71.98 0.66 -4.25 16 2 C 0.09 2.97 2.52 44.91 0.11 3.08 16 3 H 0.05 2.00 7.47 -2.39 -0.02 1.99 16 4 C -0.05 -1.25 5.31 29.85 0.16 -1.09 16 5 C 0.10 3.09 5.91 42.55 0.25 3.34 16 6 C 0.05 1.32 10.85 84.68 0.92 2.24 16 7 N -0.46 -13.83 10.50 -195.21 -2.05 -15.88 16 8 C 0.03 0.76 11.22 84.67 0.95 1.71 16 9 C 0.04 1.21 11.23 84.67 0.95 2.16 16 10 N -0.47 -15.81 9.96 -183.29 -1.83 -17.64 16 11 N -0.68 -28.96 5.95 -495.56 -2.95 -31.91 16 12 C 0.22 12.08 5.24 85.56 0.45 12.53 16 13 C -0.53 -31.18 9.32 25.60 0.24 -30.94 16 14 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 15 C 0.00 0.01 5.46 84.66 0.46 0.47 16 16 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 17 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H 0.03 1.05 7.45 -2.39 -0.02 1.03 16 22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 24 H 0.11 2.21 7.89 -2.39 -0.02 2.19 16 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.19 4.18 7.95 -2.91 -0.02 4.15 16 27 H 0.20 3.51 8.06 -2.91 -0.02 3.49 16 28 H 0.19 4.01 8.06 -2.92 -0.02 3.98 16 29 H 0.34 13.25 8.46 -89.70 -0.76 12.50 16 30 H -0.04 -2.27 7.44 -2.39 -0.02 -2.29 16 31 H -0.02 -0.98 8.06 -2.39 -0.02 -1.00 16 32 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -72.10 278.13 0.99 -71.11 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.35 Total: 15.31 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 5.15 Total: -10.74 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -6.54 Total: -122.94 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.10 0.99 -71.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877484040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.242 kcal (2) G-P(sol) polarization free energy of solvation -72.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds