Wall clock time and date at job start Sun Mar 29 2020 22:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47282 * 2 1 4 4 C 1.53010 * 109.47196 * 119.99713 * 2 1 3 5 5 C 1.50696 * 109.47102 * 185.00127 * 4 2 1 6 6 C 1.38382 * 120.00211 * 124.97735 * 5 4 2 7 7 N 1.32124 * 120.00287 * 180.02562 * 6 5 4 8 8 C 1.32153 * 119.99716 * 0.02562 * 7 6 5 9 9 C 1.38341 * 120.00474 * 359.97438 * 8 7 6 10 10 N 1.32127 * 120.00458 * 305.00104 * 5 4 2 11 11 N 1.46893 * 109.47304 * 239.99838 * 2 1 3 12 12 C 1.46906 * 111.00207 * 84.99969 * 11 2 1 13 13 C 1.50693 * 109.47044 * 180.02562 * 12 11 2 14 14 H 1.08003 * 120.00593 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99592 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00061 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00057 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47032 * 60.00316 * 17 15 13 19 19 H 1.48492 * 109.47272 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47325 * 300.00575 * 17 15 13 21 21 H 1.09005 * 109.47242 * 300.00050 * 1 2 3 22 22 H 1.08995 * 109.47119 * 59.99976 * 1 2 3 23 23 H 1.09006 * 109.46616 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46773 * 65.00267 * 4 2 1 25 25 H 1.08996 * 109.46953 * 305.00405 * 4 2 1 26 26 H 1.08000 * 120.00109 * 0.02562 * 6 5 4 27 27 H 1.08002 * 120.00395 * 179.97438 * 8 7 6 28 28 H 1.08000 * 120.00556 * 179.97438 * 9 8 7 29 29 H 1.00909 * 111.00165 * 208.95122 * 11 2 1 30 30 H 1.08997 * 109.46609 * 300.00395 * 12 11 2 31 31 H 1.08999 * 109.46692 * 59.99615 * 12 11 2 32 32 H 0.96996 * 119.99666 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.1516 -0.0937 2.4405 7 7 5.4684 0.0000 2.4959 8 6 6.2031 -0.4034 1.4742 9 6 5.5936 -0.9244 0.3469 10 7 4.2766 -1.0187 0.2916 11 7 2.0197 -0.6925 -1.1993 12 6 2.0825 0.2226 -2.3469 13 6 2.5874 -0.5219 -3.5559 14 1 2.8371 -1.5699 -3.4795 15 6 2.7305 0.1349 -4.7597 16 7 2.4269 1.4112 -4.8527 17 14 3.3571 -0.7876 -6.2583 18 1 2.4359 -1.9101 -6.5695 19 1 3.4193 0.1370 -7.4186 20 1 4.7135 -1.3235 -5.9784 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.7517 -1.7715 1.2057 25 1 1.6054 -0.2617 2.1370 26 1 3.5512 0.2364 3.2753 27 1 7.2794 -0.3265 1.5193 28 1 6.1940 -1.2538 -0.4882 29 1 2.9174 -1.1205 -1.0286 30 1 1.0871 0.6162 -2.5525 31 1 2.7588 1.0462 -2.1182 32 1 2.5280 1.8733 -5.6995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877484041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:24 Heat of formation + Delta-G solvation = 18.194211 kcal Electronic energy + Delta-G solvation = -14739.926107 eV Core-core repulsion = 12313.373047 eV Total energy + Delta-G solvation = -2426.553060 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.09143 -38.26958 -35.39868 -34.87354 -33.40534 -31.56111 -28.27744 -28.01841 -25.60414 -24.33028 -23.36300 -21.33893 -18.66620 -18.42489 -17.91230 -16.93324 -16.68653 -16.60687 -15.61982 -15.36132 -14.99309 -14.39518 -13.94501 -13.65756 -13.47538 -13.22497 -12.92702 -12.73587 -12.55922 -12.51495 -12.33810 -12.13645 -11.94495 -11.69963 -11.22998 -10.65245 -10.14071 -9.97901 -8.93815 -8.21946 -6.33172 -0.16861 0.16042 1.38595 1.43325 1.51407 2.39844 2.72453 3.10126 3.12458 3.36056 3.50799 3.76863 3.85403 4.09355 4.24580 4.32511 4.52286 4.58699 4.65656 4.84513 4.92249 4.97405 5.10860 5.23577 5.31788 5.44718 5.45856 5.64022 6.07843 6.32249 6.60765 6.82062 6.83585 7.18897 7.38936 8.89838 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027410 B = 0.007910 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.267557 B = 3539.177815 C = 4270.853525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.082 3.918 3 H 0.006 0.994 4 C -0.062 4.062 5 C 0.066 3.934 6 C 0.051 3.949 7 N -0.455 5.455 8 C 0.043 3.957 9 C 0.046 3.954 10 N -0.468 5.468 11 N -0.695 5.695 12 C 0.220 3.780 13 C -0.532 4.532 14 H 0.060 0.940 15 C -0.001 4.001 16 N -0.937 5.937 17 Si 0.974 3.026 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.265 1.265 21 H 0.084 0.916 22 H 0.026 0.974 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.129 0.871 26 H 0.201 0.799 27 H 0.203 0.797 28 H 0.185 0.815 29 H 0.357 0.643 30 H -0.007 1.007 31 H -0.060 1.060 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 -4.164 14.784 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 H 0.024 0.976 4 C -0.100 4.100 5 C -0.074 4.074 6 C -0.108 4.108 7 N -0.169 5.169 8 C -0.116 4.116 9 C -0.113 4.113 10 N -0.185 5.185 11 N -0.336 5.336 12 C 0.091 3.909 13 C -0.570 4.570 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.798 3.202 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.189 1.189 21 H 0.103 0.897 22 H 0.045 0.955 23 H 0.084 0.916 24 H 0.115 0.885 25 H 0.147 0.853 26 H 0.218 0.782 27 H 0.220 0.780 28 H 0.202 0.798 29 H 0.184 0.816 30 H 0.012 0.988 31 H -0.042 1.042 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.442 -4.285 14.522 15.527 hybrid contribution 1.020 0.591 -1.041 1.573 sum 4.462 -3.694 13.481 14.673 Atomic orbital electron populations 1.21734 0.93527 1.02384 1.01125 1.21503 0.96719 0.94330 0.90347 0.97636 1.20839 0.86755 1.03346 0.99054 1.22710 0.98688 0.95065 0.90914 1.24039 0.91746 0.96293 0.98744 1.68499 1.06967 1.12981 1.28495 1.24213 1.03125 0.94737 0.89511 1.24236 0.90999 0.96170 0.99944 1.67851 1.08081 1.14576 1.27971 1.60879 1.36062 1.32975 1.03691 1.19050 0.92856 0.89712 0.89247 1.21504 1.43483 0.96835 0.95168 0.92150 1.26000 0.95636 0.95787 1.02430 1.70107 1.49919 1.10786 1.26920 0.85373 0.79196 0.78192 0.77463 1.19224 1.20610 1.18949 0.89683 0.95508 0.91605 0.88474 0.85306 0.78220 0.78028 0.79814 0.81550 0.98847 1.04225 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.41 71.98 0.68 -3.50 16 2 C 0.08 3.01 2.63 44.92 0.12 3.13 16 3 H 0.01 0.23 7.80 -2.39 -0.02 0.21 16 4 C -0.06 -1.62 5.28 29.85 0.16 -1.46 16 5 C 0.07 1.90 6.18 42.55 0.26 2.17 16 6 C 0.05 1.21 10.85 84.68 0.92 2.13 16 7 N -0.45 -11.43 10.50 -195.23 -2.05 -13.48 16 8 C 0.04 0.98 11.22 84.67 0.95 1.93 16 9 C 0.05 1.26 11.22 84.67 0.95 2.21 16 10 N -0.47 -15.82 7.42 -183.30 -1.36 -17.18 16 11 N -0.70 -32.71 6.29 -495.58 -3.12 -35.83 16 12 C 0.22 12.76 5.24 85.55 0.45 13.21 16 13 C -0.53 -32.27 9.32 25.60 0.24 -32.03 16 14 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 15 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 16 N -0.94 -59.04 13.29 21.45 0.28 -58.75 16 17 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 21 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 22 H 0.03 1.01 7.45 -2.39 -0.02 0.99 16 23 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 24 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.13 2.19 7.89 -2.39 -0.02 2.17 16 26 H 0.20 3.11 7.95 -2.91 -0.02 3.09 16 27 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.18 4.21 8.06 -2.91 -0.02 4.18 16 29 H 0.36 16.42 5.13 -89.69 -0.46 15.96 16 30 H -0.01 -0.41 7.44 -2.39 -0.02 -0.43 16 31 H -0.06 -3.82 8.05 -2.39 -0.02 -3.84 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -75.38 273.55 1.61 -73.77 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.65 Total: 15.45 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 5.18 Total: -11.80 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -6.24 Total: -125.24 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -75.38 1.61 -73.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877484041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.962 kcal (2) G-P(sol) polarization free energy of solvation -75.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds