Wall clock time and date at job start Sun Mar 29 2020 22:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38622 * 120.44222 * 2 1 4 4 C 1.38581 * 118.39650 * 180.02562 * 3 2 1 5 5 N 1.32353 * 119.10338 * 359.97438 * 4 3 2 6 6 C 1.31783 * 120.81962 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.11976 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46919 * 90.00350 * 7 6 5 9 9 C 1.46901 * 111.00184 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47110 * 35.00235 * 9 8 7 11 11 C 1.52995 * 109.47260 * 275.00047 * 9 8 7 12 12 C 1.50696 * 109.47194 * 154.99912 * 9 8 7 13 13 H 1.07998 * 120.00256 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99915 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00307 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99889 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47207 * 89.99647 * 16 14 12 18 18 H 1.48504 * 109.47149 * 209.99388 * 16 14 12 19 19 H 1.48500 * 109.47292 * 329.99624 * 16 14 12 20 20 N 1.31813 * 121.75619 * 359.71735 * 6 5 4 21 21 H 1.08999 * 109.47015 * 90.00521 * 1 2 3 22 22 H 1.09000 * 109.46646 * 209.99674 * 1 2 3 23 23 H 1.09000 * 109.47248 * 330.00391 * 1 2 3 24 24 H 1.07992 * 120.80449 * 359.97438 * 3 2 1 25 25 H 1.07996 * 120.44578 * 179.97438 * 4 3 2 26 26 H 1.08995 * 109.46953 * 209.99682 * 7 6 5 27 27 H 1.08997 * 109.47538 * 330.00468 * 7 6 5 28 28 H 1.00903 * 111.00012 * 303.94958 * 8 7 6 29 29 H 1.08999 * 109.47214 * 59.99367 * 11 9 8 30 30 H 1.08997 * 109.47386 * 179.97438 * 11 9 8 31 31 H 1.09001 * 109.47212 * 300.00125 * 11 9 8 32 32 H 0.96996 * 120.00400 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1951 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1964 -0.0330 -0.0005 6 6 3.4957 -1.1491 -0.0005 7 6 4.2207 -2.4702 0.0001 8 7 4.4556 -2.8991 1.3853 9 6 5.1616 -4.1868 1.4252 10 1 5.8642 -4.2419 0.5936 11 6 4.1483 -5.3276 1.3132 12 6 5.9126 -4.3079 2.7261 13 1 5.8694 -3.5085 3.4510 14 6 6.6548 -5.4393 2.9909 15 7 6.7070 -6.4130 2.1085 16 14 7.5851 -5.5897 4.6038 17 1 6.7112 -6.2262 5.6218 18 1 8.7968 -6.4238 4.4004 19 1 7.9869 -4.2387 5.0713 20 7 2.1776 -1.1407 0.0050 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6899 2.1419 -0.0004 25 1 4.1745 2.0566 -0.0010 26 1 3.6154 -3.2170 -0.5137 27 1 5.1759 -2.3608 -0.5133 28 1 4.9598 -2.1939 1.9016 29 1 3.6051 -5.2400 0.3723 30 1 4.6721 -6.2830 1.3423 31 1 3.4457 -5.2725 2.1447 32 1 7.2288 -7.2091 2.2949 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878820585.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:06 Heat of formation + Delta-G solvation = 42.250607 kcal Electronic energy + Delta-G solvation = -14432.700992 eV Core-core repulsion = 12007.191096 eV Total energy + Delta-G solvation = -2425.509896 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89038 -36.03624 -34.29140 -33.19261 -31.83708 -29.04978 -28.27610 -25.70385 -24.87210 -23.20119 -21.56022 -19.76004 -17.55119 -16.74690 -15.94792 -15.20567 -15.06383 -14.68248 -13.99323 -13.61850 -13.54045 -13.00891 -12.77553 -12.42953 -12.28578 -11.76981 -11.23179 -10.94897 -10.72900 -10.62452 -10.39770 -10.25903 -10.10173 -9.98939 -9.31023 -9.04513 -8.80110 -8.45048 -7.29672 -6.00162 -4.06371 1.01588 1.22550 3.32571 3.38530 3.42081 3.84870 4.08440 4.25993 4.43861 4.52332 5.00413 5.12999 5.30755 5.32217 5.41478 5.49603 5.57286 5.76607 5.84669 6.18076 6.20767 6.57479 6.91645 7.18541 7.20166 7.24853 7.50653 7.80041 7.91043 8.27970 8.34886 8.37594 8.65022 9.02590 9.59122 11.06288 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046461 B = 0.005754 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.508637 B = 4864.667074 C = 5077.680706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.171 3.829 3 C -0.244 4.244 4 C 0.147 3.853 5 N -0.522 5.522 6 C 0.343 3.657 7 C 0.124 3.876 8 N -0.678 5.678 9 C 0.213 3.787 10 H 0.005 0.995 11 C -0.124 4.124 12 C -0.517 4.517 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.502 5.502 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.142 0.858 25 H 0.164 0.836 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.333 0.667 29 H 0.006 0.994 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.093 13.362 -5.124 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.024 3.976 3 C -0.267 4.267 4 C -0.018 4.018 5 N -0.236 5.236 6 C 0.076 3.924 7 C -0.007 4.007 8 N -0.310 5.310 9 C 0.106 3.894 10 H 0.022 0.978 11 C -0.183 4.183 12 C -0.556 4.556 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.200 1.200 20 N -0.217 5.217 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.096 0.904 24 H 0.160 0.840 25 H 0.181 0.819 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.151 0.849 29 H 0.025 0.975 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.145 11.998 -5.083 15.918 hybrid contribution 0.955 1.097 0.617 1.580 sum -8.190 13.094 -4.466 16.077 Atomic orbital electron populations 1.20763 0.88160 1.03975 1.03355 1.21796 0.97597 0.88447 0.89786 1.22665 0.96688 1.00239 1.07071 1.23192 0.92106 0.96260 0.90284 1.68327 1.41942 0.98860 1.14515 1.23492 0.86427 0.94556 0.87961 1.20690 0.97205 0.88380 0.94392 1.60780 1.54901 1.06976 1.08365 1.19148 0.90116 0.83677 0.96446 0.97783 1.21716 0.98020 1.01932 0.96612 1.21229 1.28393 1.03382 1.02593 0.92247 1.24903 0.96453 0.95630 0.96953 1.69893 1.41008 1.07312 1.34629 0.86502 0.79227 0.78019 0.83665 1.20628 1.21250 1.19956 1.68200 1.09955 1.29866 1.13698 0.89963 0.89780 0.90419 0.84049 0.81851 0.89181 0.93304 0.84950 0.97491 0.90024 0.94891 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.22 36.01 0.37 -0.62 16 2 C 0.17 2.30 6.82 -82.24 -0.56 1.74 16 3 C -0.24 -2.78 9.86 -39.31 -0.39 -3.17 16 4 C 0.15 1.89 11.31 -17.20 -0.19 1.69 16 5 N -0.52 -8.83 10.33 -10.72 -0.11 -8.94 16 6 C 0.34 6.30 7.15 -157.19 -1.12 5.18 16 7 C 0.12 2.49 5.92 -4.98 -0.03 2.47 16 8 N -0.68 -15.56 6.29 -109.23 -0.69 -16.25 16 9 C 0.21 5.58 2.60 -68.87 -0.18 5.40 16 10 H 0.00 0.13 7.80 -51.93 -0.41 -0.28 16 11 C -0.12 -3.19 9.19 37.15 0.34 -2.85 16 12 C -0.52 -14.55 8.59 -34.44 -0.30 -14.85 16 13 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -25.70 11.32 55.43 0.63 -25.07 16 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 N -0.50 -8.73 10.27 -6.98 -0.07 -8.80 16 21 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 24 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 25 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 26 H 0.09 1.80 7.43 -51.93 -0.39 1.42 16 27 H 0.05 0.97 8.06 -51.93 -0.42 0.56 16 28 H 0.33 7.69 8.22 -39.29 -0.32 7.36 16 29 H 0.01 0.14 7.45 -51.93 -0.39 -0.24 16 30 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 275.64 15.07 4.15 4.15 Total: -1.00 -31.26 275.64 -7.57 -38.83 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.30 Total: 2.85 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.16 Total: -3.34 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.24 Total: -59.07 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.26 -7.57 -38.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820585.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.083 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds