Wall clock time and date at job start Sun Mar 29 2020 22:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38622 * 120.44222 * 2 1 4 4 C 1.38581 * 118.39650 * 180.02562 * 3 2 1 5 5 N 1.32353 * 119.10338 * 359.97438 * 4 3 2 6 6 C 1.31783 * 120.81962 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.11976 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46919 * 90.00350 * 7 6 5 9 9 C 1.46901 * 111.00184 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47110 * 35.00235 * 9 8 7 11 11 C 1.52995 * 109.47260 * 275.00047 * 9 8 7 12 12 C 1.50696 * 109.47194 * 154.99912 * 9 8 7 13 13 H 1.07998 * 120.00256 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99915 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00307 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99889 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47207 * 89.99647 * 16 14 12 18 18 H 1.48504 * 109.47149 * 209.99388 * 16 14 12 19 19 H 1.48500 * 109.47292 * 329.99624 * 16 14 12 20 20 N 1.31813 * 121.75619 * 359.71735 * 6 5 4 21 21 H 1.08999 * 109.47015 * 90.00521 * 1 2 3 22 22 H 1.09000 * 109.46646 * 209.99674 * 1 2 3 23 23 H 1.09000 * 109.47248 * 330.00391 * 1 2 3 24 24 H 1.07992 * 120.80449 * 359.97438 * 3 2 1 25 25 H 1.07996 * 120.44578 * 179.97438 * 4 3 2 26 26 H 1.08995 * 109.46953 * 209.99682 * 7 6 5 27 27 H 1.08997 * 109.47538 * 330.00468 * 7 6 5 28 28 H 1.00903 * 111.00012 * 303.94958 * 8 7 6 29 29 H 1.08999 * 109.47214 * 59.99367 * 11 9 8 30 30 H 1.08997 * 109.47386 * 179.97438 * 11 9 8 31 31 H 1.09001 * 109.47212 * 300.00125 * 11 9 8 32 32 H 0.96996 * 120.00400 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1951 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1964 -0.0330 -0.0005 6 6 3.4957 -1.1491 -0.0005 7 6 4.2207 -2.4702 0.0001 8 7 4.4556 -2.8991 1.3853 9 6 5.1616 -4.1868 1.4252 10 1 5.8642 -4.2419 0.5936 11 6 4.1483 -5.3276 1.3132 12 6 5.9126 -4.3079 2.7261 13 1 5.8694 -3.5085 3.4510 14 6 6.6548 -5.4393 2.9909 15 7 6.7070 -6.4130 2.1085 16 14 7.5851 -5.5897 4.6038 17 1 6.7112 -6.2262 5.6218 18 1 8.7968 -6.4238 4.4004 19 1 7.9869 -4.2387 5.0713 20 7 2.1776 -1.1407 0.0050 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6899 2.1419 -0.0004 25 1 4.1745 2.0566 -0.0010 26 1 3.6154 -3.2170 -0.5137 27 1 5.1759 -2.3608 -0.5133 28 1 4.9598 -2.1939 1.9016 29 1 3.6051 -5.2400 0.3723 30 1 4.6721 -6.2830 1.3423 31 1 3.4457 -5.2725 2.1447 32 1 7.2288 -7.2091 2.2949 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878820585.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:05 Heat of formation + Delta-G solvation = 20.050995 kcal Electronic energy + Delta-G solvation = -14433.663640 eV Core-core repulsion = 12007.191096 eV Total energy + Delta-G solvation = -2426.472544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.00991 -37.87745 -35.44386 -34.83823 -33.40826 -30.73209 -29.33340 -27.57981 -26.72850 -24.27111 -22.85352 -21.77935 -18.87265 -18.50650 -17.20839 -16.84705 -16.29938 -16.12294 -15.73643 -15.19687 -14.89994 -14.29249 -13.96714 -13.79142 -13.57253 -13.13479 -13.09858 -12.81712 -12.68249 -12.34461 -12.21707 -12.06476 -11.62318 -11.52537 -10.94261 -10.59510 -10.34710 -10.18319 -9.18816 -8.14498 -6.29105 -0.08440 0.19798 1.42435 1.43444 1.53965 2.40614 2.69392 2.91866 3.14047 3.20706 3.65169 3.76570 4.06955 4.21593 4.40903 4.43375 4.61835 4.68743 4.76402 4.82351 4.95529 5.07149 5.12782 5.16771 5.42165 5.54118 5.63237 5.80896 6.14834 6.18083 6.36461 6.64664 6.90331 7.19846 7.40673 8.91567 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046461 B = 0.005754 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.508637 B = 4864.667074 C = 5077.680706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.151 3.849 3 C -0.220 4.220 4 C 0.136 3.864 5 N -0.549 5.549 6 C 0.319 3.681 7 C 0.131 3.869 8 N -0.675 5.675 9 C 0.217 3.783 10 H -0.024 1.024 11 C -0.112 4.112 12 C -0.540 4.540 13 H 0.056 0.944 14 C 0.015 3.985 15 N -0.916 5.916 16 Si 0.966 3.034 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.269 1.269 20 N -0.534 5.534 21 H 0.099 0.901 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.191 0.809 25 H 0.203 0.797 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.331 0.669 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.026 0.974 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 15.623 -4.600 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.006 3.994 3 C -0.241 4.241 4 C -0.028 4.028 5 N -0.264 5.264 6 C 0.050 3.950 7 C 0.000 4.000 8 N -0.307 5.307 9 C 0.109 3.891 10 H -0.006 1.006 11 C -0.170 4.170 12 C -0.579 4.579 13 H 0.074 0.926 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.791 3.209 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.194 1.194 20 N -0.250 5.250 21 H 0.117 0.883 22 H 0.089 0.911 23 H 0.129 0.871 24 H 0.208 0.792 25 H 0.220 0.780 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.148 0.852 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.140 14.286 -4.569 18.105 hybrid contribution 1.171 0.521 0.386 1.339 sum -8.968 14.807 -4.183 17.809 Atomic orbital electron populations 1.20889 0.85303 1.04926 1.04702 1.22576 0.99495 0.88190 0.89164 1.23173 0.96107 1.01431 1.03415 1.23938 0.93535 0.96008 0.89300 1.68246 1.42864 0.99832 1.15498 1.22872 0.87030 0.94076 0.90982 1.20508 0.97124 0.90024 0.92345 1.60667 1.53760 1.05812 1.10452 1.18967 0.89799 0.85463 0.94845 1.00641 1.21535 0.97554 1.00746 0.97181 1.21508 1.29338 1.03715 1.03291 0.92580 1.25731 0.97162 0.95148 1.00395 1.70012 1.41441 1.07704 1.36333 0.85438 0.77939 0.78167 0.79338 1.20026 1.20562 1.19367 1.68115 1.09609 1.32403 1.14873 0.88264 0.91147 0.87120 0.79152 0.78002 0.89890 0.94019 0.85250 0.95858 0.92018 0.95458 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 10.22 71.24 0.73 -0.86 16 2 C 0.15 3.73 6.82 42.58 0.29 4.02 16 3 C -0.22 -4.15 9.86 22.44 0.22 -3.92 16 4 C 0.14 3.12 11.31 84.70 0.96 4.08 16 5 N -0.55 -18.27 10.33 -187.84 -1.94 -20.21 16 6 C 0.32 11.83 7.15 138.75 0.99 12.82 16 7 C 0.13 5.47 5.92 85.56 0.51 5.97 16 8 N -0.68 -32.03 6.29 -499.48 -3.14 -35.17 16 9 C 0.22 11.76 2.60 44.17 0.11 11.87 16 10 H -0.02 -1.41 7.80 -2.39 -0.02 -1.42 16 11 C -0.11 -5.88 9.19 71.98 0.66 -5.22 16 12 C -0.54 -30.98 8.59 25.60 0.22 -30.76 16 13 H 0.06 3.18 7.62 -2.91 -0.02 3.16 16 14 C 0.02 0.86 5.30 84.66 0.45 1.31 16 15 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 16 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 N -0.53 -18.40 10.27 -176.01 -1.81 -20.21 16 21 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 23 H 0.11 1.00 8.10 -2.39 -0.02 0.98 16 24 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 25 H 0.20 2.83 8.06 -2.91 -0.02 2.80 16 26 H 0.08 3.48 7.43 -2.39 -0.02 3.46 16 27 H 0.04 1.76 8.06 -2.39 -0.02 1.74 16 28 H 0.33 15.76 8.22 -89.69 -0.74 15.02 16 29 H 0.02 1.09 7.45 -2.39 -0.02 1.07 16 30 H 0.06 3.49 6.07 -2.39 -0.01 3.47 16 31 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -69.32 275.64 0.90 -68.42 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.38 Total: 14.90 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 5.14 Total: -0.69 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -6.65 Total: -129.08 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -69.32 0.90 -68.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820585.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.469 kcal (2) G-P(sol) polarization free energy of solvation -69.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds