Wall clock time and date at job start Sun Mar 29 2020 21:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09006 * 109.47583 * 2 1 4 4 C 1.50704 * 109.47023 * 239.99770 * 2 1 3 5 5 H 1.07994 * 120.00473 * 240.00002 * 4 2 1 6 6 C 1.37884 * 119.99518 * 60.00975 * 4 2 1 7 7 N 1.31511 * 120.00248 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99572 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47556 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.46975 * 119.99608 * 8 6 4 11 11 H 1.48494 * 109.47218 * 239.99322 * 8 6 4 12 12 N 1.46501 * 109.47051 * 120.00397 * 2 1 3 13 13 C 1.37820 * 120.00033 * 274.99651 * 12 2 1 14 14 N 1.32714 * 119.01230 * 180.02562 * 13 12 2 15 15 C 1.31892 * 120.93421 * 180.02562 * 14 13 12 16 16 C 1.40415 * 118.96759 * 0.25441 * 15 14 13 17 17 C 1.46813 * 120.88890 * 179.72583 * 16 15 14 18 18 O 1.21299 * 120.00459 * 359.97438 * 17 16 15 19 19 C 1.40415 * 118.21391 * 359.50062 * 16 15 14 20 20 N 1.31888 * 118.96830 * 0.49970 * 19 16 15 21 21 H 1.08995 * 109.48026 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47192 * 299.99866 * 1 2 3 23 23 H 1.09008 * 109.47341 * 59.99747 * 1 2 3 24 24 H 0.96993 * 120.00336 * 180.02562 * 7 6 4 25 25 H 0.97000 * 120.00296 * 94.99712 * 12 2 1 26 26 H 1.08002 * 120.51241 * 179.97438 * 15 14 13 27 27 H 1.08004 * 119.99463 * 179.97438 * 17 16 15 28 28 H 1.07995 * 120.51678 * 180.21581 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1481 -2.2856 -3.6039 10 1 1.1676 -1.5864 -4.8166 11 1 3.1472 -0.1858 -4.8161 12 7 2.0182 -0.6907 1.1961 13 6 2.1499 -0.0032 2.3834 14 7 2.5946 -0.6481 3.4547 15 6 2.7346 -0.0275 4.6100 16 6 2.4001 1.3335 4.6958 17 6 2.5340 2.0641 5.9622 18 8 2.9378 1.4922 6.9527 19 6 1.9386 1.9780 3.5368 20 7 1.8278 1.2837 2.4210 21 1 -0.3635 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.7083 1.1611 -3.4843 25 1 2.2489 -1.6319 1.1526 26 1 3.0967 -0.5591 5.4776 27 1 2.2729 3.1109 6.0118 28 1 1.6742 3.0248 3.5599 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881895252.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:25 Heat of formation + Delta-G solvation = -2.351660 kcal Electronic energy + Delta-G solvation = -14212.370579 eV Core-core repulsion = 11649.093489 eV Total energy + Delta-G solvation = -2563.277090 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.89003 -39.61151 -37.69607 -34.88826 -34.66326 -32.43068 -30.28080 -27.37419 -25.87168 -25.35874 -22.95680 -21.97308 -19.70845 -18.56713 -18.05677 -17.27412 -16.78947 -16.20514 -15.97585 -15.52974 -15.28646 -14.86880 -14.45415 -14.27208 -13.84695 -13.09467 -12.99844 -12.83684 -12.57135 -12.30699 -12.12746 -11.91659 -11.34433 -11.04884 -10.60909 -10.54341 -10.01242 -8.96088 -8.20948 -6.37023 -0.30316 0.35332 1.41967 1.44141 1.54986 1.65753 2.07753 2.42577 3.01648 3.10381 3.32214 3.53368 3.77890 3.85494 4.12613 4.72066 4.76589 4.82114 4.96521 5.06815 5.25572 5.48008 5.61737 5.75425 5.95953 6.02916 6.23841 6.62942 6.68068 6.74349 7.30497 7.45715 8.84996 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.068576 B = 0.005843 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.205941 B = 4790.808229 C = 4963.411324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.284 3.716 3 H 0.028 0.972 4 C -0.556 4.556 5 H 0.063 0.937 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.967 3.033 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.280 1.280 12 N -0.664 5.664 13 C 0.570 3.430 14 N -0.610 5.610 15 C 0.237 3.763 16 C -0.388 4.388 17 C 0.420 3.580 18 O -0.518 6.518 19 C 0.248 3.752 20 N -0.600 5.600 21 H 0.027 0.973 22 H 0.022 0.978 23 H 0.072 0.928 24 H 0.268 0.732 25 H 0.409 0.591 26 H 0.183 0.817 27 H 0.162 0.838 28 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 3.407 10.629 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.181 3.819 3 H 0.045 0.955 4 C -0.594 4.594 5 H 0.081 0.919 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.205 1.205 12 N -0.293 5.293 13 C 0.214 3.786 14 N -0.334 5.334 15 C 0.067 3.933 16 C -0.398 4.398 17 C 0.281 3.719 18 O -0.394 6.394 19 C 0.077 3.923 20 N -0.324 5.324 21 H 0.046 0.954 22 H 0.041 0.959 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.245 0.755 26 H 0.200 0.800 27 H 0.178 0.822 28 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.948 2.749 9.826 10.247 hybrid contribution 0.337 -0.469 -0.383 0.693 sum 1.284 2.280 9.443 9.799 Atomic orbital electron populations 1.21896 0.97908 0.98946 1.00218 1.18530 0.91174 0.92578 0.79624 0.95455 1.21547 1.32955 1.13688 0.91219 0.91924 1.25633 0.94783 0.95566 1.01760 1.70000 1.36467 1.23457 1.24706 0.85369 0.78164 0.78493 0.78746 1.19250 1.20257 1.20541 1.45090 1.64891 1.12880 1.06390 1.19898 0.85499 0.86365 0.86863 1.68018 1.24510 1.40495 1.00363 1.23602 0.84663 0.91649 0.93372 1.22483 1.18258 0.98216 1.00869 1.24108 0.70262 0.94658 0.82836 1.90516 1.37122 1.73352 1.38416 1.24076 0.83000 1.00750 0.84446 1.68153 1.25780 1.07132 1.31340 0.95421 0.95872 0.90917 0.92308 0.75511 0.79976 0.82249 0.76570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 9.27 71.98 0.67 -5.63 15 2 C 0.28 14.08 2.54 44.24 0.11 14.20 15 3 H 0.03 1.53 7.49 -2.38 -0.02 1.51 15 4 C -0.56 -29.22 8.73 25.60 0.22 -29.00 15 5 H 0.06 3.21 7.74 -2.91 -0.02 3.19 15 6 C 0.02 1.24 5.30 84.66 0.45 1.69 15 7 N -0.91 -49.65 11.32 21.45 0.24 -49.41 15 8 Si 0.97 41.55 29.54 68.60 2.03 43.57 15 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 10 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 11 H -0.28 -11.84 7.11 99.48 0.71 -11.14 15 12 N -0.66 -28.85 5.19 -334.19 -1.73 -30.59 15 13 C 0.57 22.79 8.38 261.58 2.19 24.98 15 14 N -0.61 -22.02 10.43 -196.93 -2.05 -24.08 15 15 C 0.24 6.93 10.88 85.21 0.93 7.85 15 16 C -0.39 -9.30 5.90 -19.97 -0.12 -9.42 15 17 C 0.42 7.49 11.48 70.06 0.80 8.29 15 18 O -0.52 -13.37 17.25 -3.09 -0.05 -13.43 15 19 C 0.25 6.30 11.10 85.21 0.95 7.24 15 20 N -0.60 -22.30 9.14 -196.94 -1.80 -24.10 15 21 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.07 3.81 6.07 -2.38 -0.01 3.79 15 24 H 0.27 13.78 8.31 -92.71 -0.77 13.01 15 25 H 0.41 16.79 8.65 -92.71 -0.80 15.99 15 26 H 0.18 4.57 7.73 -2.91 -0.02 4.54 15 27 H 0.16 1.10 8.06 -2.91 -0.02 1.07 15 28 H 0.22 3.11 8.06 -2.91 -0.02 3.09 15 Total: -1.00 -65.16 256.16 3.22 -61.94 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.39 Total: 15.89 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.20 Total: 20.20 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -5.35 Total: -128.18 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.05 Total: -13.43 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -65.16 3.22 -61.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881895252.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.591 kcal (2) G-P(sol) polarization free energy of solvation -65.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds