Wall clock time and date at job start Sun Mar 29 2020 21:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47273 * 2 1 4 4 C 1.50701 * 109.46935 * 120.00490 * 2 1 3 5 5 H 1.08001 * 119.99773 * 119.99904 * 4 2 1 6 6 C 1.37874 * 119.99847 * 299.99219 * 4 2 1 7 7 N 1.31520 * 120.00049 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00264 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47123 * 89.99924 * 8 6 4 10 10 H 1.48499 * 109.47443 * 209.99836 * 8 6 4 11 11 H 1.48503 * 109.47037 * 329.99985 * 8 6 4 12 12 N 1.46501 * 109.46551 * 239.99861 * 2 1 3 13 13 C 1.37820 * 120.00034 * 85.00573 * 12 2 1 14 14 N 1.32715 * 119.01228 * 179.97438 * 13 12 2 15 15 C 1.31892 * 120.93400 * 179.97438 * 14 13 12 16 16 C 1.40416 * 118.96760 * 0.27491 * 15 14 13 17 17 C 1.46813 * 120.88872 * 179.69836 * 16 15 14 18 18 O 1.21297 * 119.99623 * 179.97438 * 17 16 15 19 19 C 1.40416 * 118.21409 * 359.44024 * 16 15 14 20 20 N 1.31888 * 118.96755 * 0.56230 * 19 16 15 21 21 H 1.08996 * 109.47165 * 59.99599 * 1 2 3 22 22 H 1.09004 * 109.47517 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46913 * 299.99995 * 1 2 3 24 24 H 0.96996 * 120.00086 * 180.02562 * 7 6 4 25 25 H 0.97000 * 120.00315 * 264.99810 * 12 2 1 26 26 H 1.08002 * 120.51241 * 179.97438 * 15 14 13 27 27 H 1.07998 * 120.00301 * 359.97438 * 17 16 15 28 28 H 1.07996 * 120.51746 * 180.28206 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6250 1.2790 2.6542 9 1 -0.8026 0.8727 2.6999 10 1 0.9762 1.9950 3.9069 11 1 0.8473 2.1765 1.4921 12 7 2.0182 -0.6907 -1.1962 13 6 2.1499 -0.0031 -2.3834 14 7 2.5945 -0.6480 -3.4548 15 6 2.7345 -0.0274 -4.6101 16 6 2.4107 1.3364 -4.6930 17 6 2.5569 2.0703 -5.9562 18 8 2.2720 3.2481 -6.0097 19 6 1.9381 1.9780 -3.5369 20 7 1.8274 1.2837 -2.4211 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.9035 -0.5281 4.4375 25 1 2.2489 -1.6318 -1.1527 26 1 3.0973 -0.5587 -5.4775 27 1 2.9181 1.5615 -6.8377 28 1 1.6738 3.0249 -3.5599 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881895259.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:30 Heat of formation + Delta-G solvation = 25.242808 kcal Electronic energy + Delta-G solvation = -14301.311363 eV Core-core repulsion = 11739.230859 eV Total energy + Delta-G solvation = -2562.080504 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74062 -38.62010 -36.32375 -33.52373 -33.02121 -31.34550 -29.32136 -25.42299 -24.65737 -24.31117 -21.55336 -20.68816 -18.34069 -17.31951 -16.64327 -16.22511 -15.38961 -14.97892 -14.81817 -14.35726 -13.85867 -13.61514 -13.28290 -13.08122 -12.31218 -12.11095 -11.68851 -11.45337 -10.86468 -10.71168 -10.34324 -10.04749 -9.70482 -9.63276 -9.34523 -8.84877 -8.77695 -7.66985 -6.29351 -4.33733 0.75774 1.43841 2.58833 3.17081 3.29188 3.31429 3.37432 4.15659 4.23142 4.33021 4.39137 4.73093 5.02496 5.04794 5.12186 5.57494 5.84606 6.15673 6.21027 6.38471 6.46867 6.71773 7.02205 7.11973 7.32636 7.46075 7.49619 7.89349 8.31353 8.59260 8.73143 9.29085 10.82642 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049351 B = 0.006877 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.224888 B = 4070.632917 C = 4428.757100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.244 3.756 3 H 0.058 0.942 4 C -0.542 4.542 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.886 3.114 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.260 1.260 12 N -0.642 5.642 13 C 0.586 3.414 14 N -0.589 5.589 15 C 0.248 3.752 16 C -0.400 4.400 17 C 0.404 3.596 18 O -0.483 6.483 19 C 0.257 3.743 20 N -0.572 5.572 21 H 0.037 0.963 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.269 0.731 25 H 0.413 0.587 26 H 0.170 0.830 27 H 0.099 0.901 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.405 2.293 -14.924 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.580 4.580 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.184 1.184 12 N -0.268 5.268 13 C 0.230 3.770 14 N -0.312 5.312 15 C 0.075 3.925 16 C -0.411 4.411 17 C 0.264 3.736 18 O -0.358 6.358 19 C 0.084 3.916 20 N -0.295 5.295 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.251 0.749 26 H 0.187 0.813 27 H 0.115 0.885 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.738 2.407 -13.489 13.722 hybrid contribution -0.378 0.609 -0.450 0.847 sum -1.116 3.016 -13.939 14.305 Atomic orbital electron populations 1.22471 0.98858 1.01024 0.99542 1.19319 0.90384 0.94806 0.81484 0.92417 1.20995 1.33797 1.14775 0.88398 0.90055 1.24807 0.95414 0.96768 0.95365 1.69861 1.44516 1.40008 0.98122 0.86868 0.80500 0.83442 0.77672 1.20211 1.22019 1.18427 1.45041 1.62996 1.13001 1.05725 1.19796 0.84660 0.85724 0.86869 1.67986 1.23534 1.39872 0.99818 1.23144 0.85410 0.89809 0.94145 1.22068 1.20459 0.98597 1.00000 1.23418 0.72645 0.87677 0.89907 1.90514 1.39636 1.18522 1.87101 1.23282 0.83542 0.99221 0.85553 1.68154 1.25202 1.07096 1.29048 0.94432 0.92781 0.93063 0.92100 0.74922 0.81349 0.88457 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.97 37.16 0.33 -3.11 15 2 C 0.24 5.58 2.13 -69.08 -0.15 5.44 15 3 H 0.06 1.42 6.54 -51.93 -0.34 1.08 15 4 C -0.54 -14.38 9.31 -34.44 -0.32 -14.70 15 5 H 0.08 2.30 7.98 -52.49 -0.42 1.88 15 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 15 7 N -0.89 -25.94 13.96 55.43 0.77 -25.17 15 8 Si 0.89 21.05 24.37 -169.99 -4.14 16.90 15 9 H -0.28 -6.34 6.87 56.52 0.39 -5.96 15 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 11 H -0.26 -6.02 6.53 56.52 0.37 -5.65 15 12 N -0.64 -12.92 5.19 -56.98 -0.30 -13.21 15 13 C 0.59 10.96 8.38 -323.08 -2.71 8.25 15 14 N -0.59 -9.48 10.43 -13.60 -0.14 -9.62 15 15 C 0.25 2.98 11.10 -16.71 -0.19 2.79 15 16 C -0.40 -4.99 5.90 -104.79 -0.62 -5.61 15 17 C 0.40 4.17 11.48 34.20 0.39 4.56 15 18 O -0.48 -6.83 17.25 5.54 0.10 -6.73 15 19 C 0.26 3.91 10.88 -16.71 -0.18 3.73 15 20 N -0.57 -10.64 9.14 -13.60 -0.12 -10.76 15 21 H 0.04 0.75 8.14 -51.93 -0.42 0.32 15 22 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.05 1.13 3.27 -51.92 -0.17 0.96 15 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 25 H 0.41 7.85 8.65 -40.82 -0.35 7.50 15 26 H 0.17 1.19 8.06 -52.49 -0.42 0.77 15 27 H 0.10 0.56 8.06 -52.49 -0.42 0.14 15 28 H 0.17 2.29 7.73 -52.49 -0.41 1.88 15 LS Contribution 249.34 15.07 3.76 3.76 Total: -1.00 -31.13 249.34 -6.17 -37.30 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -2.56 Total: 4.07 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -3.53 Total: 3.46 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.21 Total: -58.76 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: 0.10 Total: -6.73 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.14 Total: 16.90 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.13 -6.17 -37.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881895259.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.543 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds