Wall clock time and date at job start Sun Mar 29 2020 21:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47273 * 2 1 4 4 C 1.50701 * 109.46935 * 120.00490 * 2 1 3 5 5 H 1.08001 * 119.99773 * 119.99904 * 4 2 1 6 6 C 1.37874 * 119.99847 * 299.99219 * 4 2 1 7 7 N 1.31520 * 120.00049 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00264 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47123 * 89.99924 * 8 6 4 10 10 H 1.48499 * 109.47443 * 209.99836 * 8 6 4 11 11 H 1.48503 * 109.47037 * 329.99985 * 8 6 4 12 12 N 1.46501 * 109.46551 * 239.99861 * 2 1 3 13 13 C 1.37820 * 120.00034 * 85.00573 * 12 2 1 14 14 N 1.32715 * 119.01228 * 179.97438 * 13 12 2 15 15 C 1.31892 * 120.93400 * 179.97438 * 14 13 12 16 16 C 1.40416 * 118.96760 * 0.27491 * 15 14 13 17 17 C 1.46813 * 120.88872 * 179.69836 * 16 15 14 18 18 O 1.21297 * 119.99623 * 179.97438 * 17 16 15 19 19 C 1.40416 * 118.21409 * 359.44024 * 16 15 14 20 20 N 1.31888 * 118.96755 * 0.56230 * 19 16 15 21 21 H 1.08996 * 109.47165 * 59.99599 * 1 2 3 22 22 H 1.09004 * 109.47517 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46913 * 299.99995 * 1 2 3 24 24 H 0.96996 * 120.00086 * 180.02562 * 7 6 4 25 25 H 0.97000 * 120.00315 * 264.99810 * 12 2 1 26 26 H 1.08002 * 120.51241 * 179.97438 * 15 14 13 27 27 H 1.07998 * 120.00301 * 359.97438 * 17 16 15 28 28 H 1.07996 * 120.51746 * 180.28206 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6250 1.2790 2.6542 9 1 -0.8026 0.8727 2.6999 10 1 0.9762 1.9950 3.9069 11 1 0.8473 2.1765 1.4921 12 7 2.0182 -0.6907 -1.1962 13 6 2.1499 -0.0031 -2.3834 14 7 2.5945 -0.6480 -3.4548 15 6 2.7345 -0.0274 -4.6101 16 6 2.4107 1.3364 -4.6930 17 6 2.5569 2.0703 -5.9562 18 8 2.2720 3.2481 -6.0097 19 6 1.9381 1.9780 -3.5369 20 7 1.8274 1.2837 -2.4211 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.9035 -0.5281 4.4375 25 1 2.2489 -1.6318 -1.1527 26 1 3.0973 -0.5587 -5.4775 27 1 2.9181 1.5615 -6.8377 28 1 1.6738 3.0249 -3.5599 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881895259.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:29 Heat of formation + Delta-G solvation = 3.389893 kcal Electronic energy + Delta-G solvation = -14302.258977 eV Core-core repulsion = 11739.230859 eV Total energy + Delta-G solvation = -2563.028118 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.93661 -39.63858 -37.88197 -34.84772 -34.72544 -32.90842 -30.78987 -27.30115 -25.89074 -25.51715 -22.79105 -22.19035 -19.83086 -18.60989 -18.28841 -17.39495 -17.05357 -16.23568 -15.90171 -15.59264 -15.31905 -15.08301 -14.81124 -14.34498 -14.11923 -13.80235 -13.37135 -12.84384 -12.63478 -12.19535 -11.94678 -11.58138 -11.42650 -11.28711 -10.81847 -10.59702 -10.05931 -9.04596 -8.40757 -6.48574 -0.33294 0.32706 1.28379 1.36041 1.45884 1.64632 1.99547 2.24820 2.93895 3.00198 3.25619 3.51674 3.73881 3.81407 4.09698 4.41942 4.52650 4.64878 4.72979 4.84651 4.93510 5.26350 5.33748 5.44828 5.72827 6.07944 6.17648 6.52240 6.62905 6.66504 7.15430 7.37892 8.74829 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049351 B = 0.006877 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.224888 B = 4070.632917 C = 4428.757100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.257 3.743 3 H 0.041 0.959 4 C -0.542 4.542 5 H 0.050 0.950 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.944 3.056 9 H -0.260 1.260 10 H -0.293 1.293 11 H -0.252 1.252 12 N -0.660 5.660 13 C 0.571 3.429 14 N -0.601 5.601 15 C 0.254 3.746 16 C -0.385 4.385 17 C 0.418 3.582 18 O -0.520 6.520 19 C 0.234 3.766 20 N -0.607 5.607 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.271 0.729 25 H 0.414 0.586 26 H 0.229 0.771 27 H 0.167 0.833 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 2.971 -18.031 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.152 3.848 3 H 0.059 0.941 4 C -0.580 4.580 5 H 0.068 0.932 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.770 3.230 9 H -0.186 1.186 10 H -0.221 1.221 11 H -0.176 1.176 12 N -0.289 5.289 13 C 0.215 3.785 14 N -0.324 5.324 15 C 0.084 3.916 16 C -0.395 4.395 17 C 0.280 3.720 18 O -0.396 6.396 19 C 0.065 3.935 20 N -0.331 5.331 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.251 0.749 26 H 0.245 0.755 27 H 0.182 0.818 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.008 3.114 -16.693 17.011 hybrid contribution -0.184 0.401 0.282 0.524 sum -1.192 3.515 -16.411 16.825 Atomic orbital electron populations 1.22340 0.97593 1.01344 0.99786 1.18863 0.91187 0.93417 0.81301 0.94131 1.21254 1.32754 1.13752 0.90226 0.93221 1.25604 0.96810 0.99668 0.95045 1.69987 1.46552 1.42055 0.98766 0.85930 0.79454 0.79971 0.77627 1.18579 1.22061 1.17587 1.44644 1.65415 1.12962 1.05841 1.19822 0.85599 0.85935 0.87100 1.68053 1.23716 1.40266 1.00383 1.24106 0.83479 0.89764 0.94241 1.22540 1.17721 0.99038 1.00232 1.24201 0.70841 0.86798 0.90189 1.90534 1.41133 1.20511 1.87408 1.23606 0.84163 0.99713 0.86055 1.68062 1.26568 1.07452 1.31015 0.93102 0.92450 0.93658 0.91936 0.74887 0.75500 0.81752 0.80748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.46 8.97 71.98 0.65 -5.81 15 2 C 0.26 11.96 2.13 44.25 0.09 12.05 15 3 H 0.04 2.03 6.54 -2.39 -0.02 2.01 15 4 C -0.54 -29.70 9.31 25.60 0.24 -29.47 15 5 H 0.05 2.96 7.98 -2.91 -0.02 2.94 15 6 C 0.03 1.61 5.45 84.65 0.46 2.07 15 7 N -0.94 -56.22 13.96 21.45 0.30 -55.93 15 8 Si 0.94 43.72 24.37 68.60 1.67 45.39 15 9 H -0.26 -11.34 6.87 99.48 0.68 -10.65 15 10 H -0.29 -13.48 7.11 99.48 0.71 -12.78 15 11 H -0.25 -11.25 6.53 99.48 0.65 -10.60 15 12 N -0.66 -26.98 5.19 -334.19 -1.73 -28.71 15 13 C 0.57 21.07 8.38 261.58 2.19 23.27 15 14 N -0.60 -18.07 10.43 -196.93 -2.05 -20.12 15 15 C 0.25 5.02 11.10 85.21 0.95 5.97 15 16 C -0.38 -8.21 5.90 -19.97 -0.12 -8.32 15 17 C 0.42 6.54 11.48 70.06 0.80 7.34 15 18 O -0.52 -12.95 17.25 -3.08 -0.05 -13.01 15 19 C 0.23 6.79 10.88 85.22 0.93 7.71 15 20 N -0.61 -22.26 9.14 -196.94 -1.80 -24.06 15 21 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 23 H 0.04 1.95 3.27 -2.38 -0.01 1.94 15 24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 15 25 H 0.41 16.23 8.65 -92.71 -0.80 15.43 15 26 H 0.23 1.65 8.06 -2.91 -0.02 1.63 15 27 H 0.17 0.61 8.06 -2.91 -0.02 0.59 15 28 H 0.18 4.61 7.73 -2.91 -0.02 4.59 15 Total: -1.00 -70.59 249.34 2.83 -67.75 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.31 Total: 13.87 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.19 Total: 14.81 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -5.29 Total: -128.82 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.05 Total: -13.01 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.67 Total: 45.39 kcal Total: -70.59 2.83 -67.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881895259.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.142 kcal (2) G-P(sol) polarization free energy of solvation -70.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds