Wall clock time and date at job start Sun Mar 29 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38819 * 120.97706 * 2 1 4 4 N 1.31796 * 120.01127 * 179.97438 * 3 2 1 5 5 N 1.28348 * 122.28427 * 0.02562 * 4 3 2 6 6 C 1.32490 * 122.07443 * 0.02562 * 5 4 3 7 7 N 1.39045 * 120.15646 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99664 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46691 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46626 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99835 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00496 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47183 * 60.00274 * 15 13 11 17 17 H 1.48496 * 109.47425 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47216 * 300.00267 * 15 13 11 19 19 C 1.38555 * 120.98140 * 180.29874 * 2 1 3 20 20 H 1.08999 * 109.46933 * 90.00105 * 1 2 3 21 21 H 1.08998 * 109.47084 * 210.00714 * 1 2 3 22 22 H 1.09005 * 109.46752 * 330.00177 * 1 2 3 23 23 H 1.08001 * 119.99817 * 359.97438 * 3 2 1 24 24 H 0.96999 * 120.00259 * 359.97438 * 7 6 5 25 25 H 1.08993 * 109.47068 * 59.99684 * 8 7 6 26 26 H 1.09000 * 109.46872 * 299.99895 * 8 7 6 27 27 H 1.08993 * 109.47839 * 59.99891 * 9 8 7 28 28 H 1.09000 * 109.47160 * 299.99453 * 9 8 7 29 29 H 1.09000 * 109.47050 * 299.99699 * 10 9 8 30 30 H 1.09001 * 109.46801 * 59.99811 * 10 9 8 31 31 H 0.96992 * 120.00038 * 180.02562 * 14 13 11 32 32 H 1.08005 * 121.04818 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2216 1.1902 0.0000 4 7 3.5393 1.1680 0.0005 5 7 4.2065 0.0715 0.0005 6 6 3.6131 -1.1131 -0.0005 7 7 4.3752 -2.2761 -0.0009 8 6 3.7154 -3.5841 -0.0026 9 6 4.7737 -4.6891 -0.0021 10 6 4.0846 -6.0552 -0.0032 11 6 5.1270 -7.1435 -0.0034 12 1 6.1760 -6.8865 -0.0033 13 6 4.7415 -8.4673 -0.0038 14 7 3.4641 -8.7802 -0.0046 15 14 6.0335 -9.8163 -0.0048 16 1 6.8819 -9.6902 1.2075 17 1 5.3648 -11.1422 -0.0057 18 1 6.8811 -9.6891 -1.2175 19 6 2.2203 -1.1879 -0.0062 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5138 23 1 1.6975 2.1346 -0.0004 24 1 5.3436 -2.2214 -0.0009 25 1 3.0936 -3.6763 -0.8930 26 1 3.0923 -3.6779 0.8869 27 1 5.3951 -4.5967 0.8885 28 1 5.3971 -4.5955 -0.8914 29 1 3.4615 -6.1485 0.8862 30 1 3.4629 -6.1477 -0.8938 31 1 3.1929 -9.7115 -0.0045 32 1 1.7137 -2.1417 -0.0108 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892328460.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:16 Heat of formation + Delta-G solvation = 35.879411 kcal Electronic energy + Delta-G solvation = -13974.843915 eV Core-core repulsion = 11549.057743 eV Total energy + Delta-G solvation = -2425.786172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.84806 -36.81406 -34.42182 -33.86840 -31.99251 -29.93366 -28.20531 -26.66277 -24.41104 -22.77684 -22.00140 -20.46923 -17.86679 -16.74567 -16.45322 -16.19213 -15.39449 -14.60519 -14.55005 -14.35045 -13.61047 -13.36373 -13.10164 -12.54506 -12.33920 -12.29223 -11.91491 -11.01938 -11.01660 -10.82739 -10.64206 -10.63506 -9.88156 -9.75866 -9.60004 -9.46755 -9.22468 -8.43445 -7.91494 -6.08735 -4.11770 0.90854 1.30443 3.16368 3.28853 3.33524 3.36179 3.75280 4.37883 4.39830 4.60925 4.77170 4.83602 4.94538 5.27549 5.30745 5.38339 5.44476 5.54819 5.64446 5.81023 5.91932 6.06711 6.18800 6.45018 6.52375 6.86780 7.12676 7.53237 7.64811 7.66910 7.89177 8.30595 8.94239 8.98094 9.53037 11.02559 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059461 B = 0.004418 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.781543 B = 6336.603489 C = 6776.333088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.047 4.047 3 C -0.028 4.028 4 N -0.203 5.203 5 N -0.323 5.323 6 C 0.351 3.649 7 N -0.708 5.708 8 C 0.120 3.880 9 C -0.121 4.121 10 C 0.025 3.975 11 C -0.524 4.524 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.187 4.187 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.163 0.837 24 H 0.408 0.592 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.262 0.738 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 14.888 -0.024 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.199 4.199 4 N -0.043 5.043 5 N -0.176 5.176 6 C 0.108 3.892 7 N -0.339 5.339 8 C -0.004 4.004 9 C -0.159 4.159 10 C -0.012 4.012 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.221 4.221 20 H 0.099 0.901 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.181 0.819 24 H 0.244 0.756 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.785 15.355 -0.022 16.083 hybrid contribution -0.382 -1.680 -0.007 1.722 sum -5.167 13.675 -0.029 14.619 Atomic orbital electron populations 1.20810 0.89422 1.03691 1.03206 1.20931 0.97887 0.93032 0.93915 1.23810 0.92416 0.98631 1.05037 1.72661 1.07331 1.18681 1.05623 1.72944 1.30685 0.93647 1.20370 1.20175 0.89617 0.89163 0.90205 1.44836 1.08967 1.02178 1.77947 1.21799 0.97118 0.80333 1.01103 1.21882 0.97146 0.95474 1.01402 1.19026 0.95944 0.88700 0.97556 1.21158 0.92989 0.90944 1.51161 0.92623 1.25013 0.95324 0.98882 0.95120 1.69943 1.14705 1.18267 1.50481 0.86626 0.81586 0.80932 0.78689 1.20184 1.21229 1.20190 1.21774 0.93019 1.00064 1.07242 0.90101 0.90633 0.90614 0.81934 0.75573 0.91962 0.91962 0.92403 0.92404 0.96279 0.96287 0.92832 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.07 36.01 0.36 -0.46 16 2 C -0.05 -0.52 5.92 -104.29 -0.62 -1.14 16 3 C -0.03 -0.34 11.03 -17.35 -0.19 -0.53 16 4 N -0.20 -3.12 11.49 30.57 0.35 -2.77 16 5 N -0.32 -5.36 11.54 31.23 0.36 -5.00 16 6 C 0.35 5.34 7.75 -154.77 -1.20 4.14 16 7 N -0.71 -10.51 5.73 -60.29 -0.35 -10.85 16 8 C 0.12 1.87 4.92 -4.04 -0.02 1.85 16 9 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 10 C 0.03 0.61 4.97 -27.88 -0.14 0.48 16 11 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 12 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.19 -2.44 9.13 -39.00 -0.36 -2.80 16 20 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 22 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 23 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 24 H 0.41 5.80 8.60 -40.82 -0.35 5.45 16 25 H 0.06 0.95 7.96 -51.93 -0.41 0.54 16 26 H 0.06 0.95 7.97 -51.93 -0.41 0.54 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.15 1.72 6.84 -52.48 -0.36 1.36 16 LS Contribution 278.94 15.07 4.20 4.20 Total: -1.00 -30.75 278.94 -6.88 -37.64 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.46 Total: -0.01 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.71 Total: -13.99 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.10 Total: -44.00 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.75 -6.88 -37.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892328460.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.516 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds