Wall clock time and date at job start Sun Mar 29 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38819 * 120.97706 * 2 1 4 4 N 1.31796 * 120.01127 * 179.97438 * 3 2 1 5 5 N 1.28348 * 122.28427 * 0.02562 * 4 3 2 6 6 C 1.32490 * 122.07443 * 0.02562 * 5 4 3 7 7 N 1.39045 * 120.15646 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99664 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46691 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46626 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99835 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00496 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47183 * 60.00274 * 15 13 11 17 17 H 1.48496 * 109.47425 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47216 * 300.00267 * 15 13 11 19 19 C 1.38555 * 120.98140 * 180.29874 * 2 1 3 20 20 H 1.08999 * 109.46933 * 90.00105 * 1 2 3 21 21 H 1.08998 * 109.47084 * 210.00714 * 1 2 3 22 22 H 1.09005 * 109.46752 * 330.00177 * 1 2 3 23 23 H 1.08001 * 119.99817 * 359.97438 * 3 2 1 24 24 H 0.96999 * 120.00259 * 359.97438 * 7 6 5 25 25 H 1.08993 * 109.47068 * 59.99684 * 8 7 6 26 26 H 1.09000 * 109.46872 * 299.99895 * 8 7 6 27 27 H 1.08993 * 109.47839 * 59.99891 * 9 8 7 28 28 H 1.09000 * 109.47160 * 299.99453 * 9 8 7 29 29 H 1.09000 * 109.47050 * 299.99699 * 10 9 8 30 30 H 1.09001 * 109.46801 * 59.99811 * 10 9 8 31 31 H 0.96992 * 120.00038 * 180.02562 * 14 13 11 32 32 H 1.08005 * 121.04818 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2216 1.1902 0.0000 4 7 3.5393 1.1680 0.0005 5 7 4.2065 0.0715 0.0005 6 6 3.6131 -1.1131 -0.0005 7 7 4.3752 -2.2761 -0.0009 8 6 3.7154 -3.5841 -0.0026 9 6 4.7737 -4.6891 -0.0021 10 6 4.0846 -6.0552 -0.0032 11 6 5.1270 -7.1435 -0.0034 12 1 6.1760 -6.8865 -0.0033 13 6 4.7415 -8.4673 -0.0038 14 7 3.4641 -8.7802 -0.0046 15 14 6.0335 -9.8163 -0.0048 16 1 6.8819 -9.6902 1.2075 17 1 5.3648 -11.1422 -0.0057 18 1 6.8811 -9.6891 -1.2175 19 6 2.2203 -1.1879 -0.0062 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5138 23 1 1.6975 2.1346 -0.0004 24 1 5.3436 -2.2214 -0.0009 25 1 3.0936 -3.6763 -0.8930 26 1 3.0923 -3.6779 0.8869 27 1 5.3951 -4.5967 0.8885 28 1 5.3971 -4.5955 -0.8914 29 1 3.4615 -6.1485 0.8862 30 1 3.4629 -6.1477 -0.8938 31 1 3.1929 -9.7115 -0.0045 32 1 1.7137 -2.1417 -0.0108 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892328460.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:16 Heat of formation + Delta-G solvation = 16.437551 kcal Electronic energy + Delta-G solvation = -13975.686977 eV Core-core repulsion = 11549.057743 eV Total energy + Delta-G solvation = -2426.629234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.87947 -38.06820 -35.67673 -35.29606 -33.68246 -31.30555 -28.98887 -28.29466 -25.76172 -24.21454 -23.05298 -22.07624 -19.00094 -18.47282 -17.71560 -17.26410 -16.61165 -16.49785 -15.80087 -15.68307 -14.58081 -14.28178 -14.10427 -13.90049 -13.76449 -13.69788 -13.17180 -12.80930 -12.55873 -12.41424 -12.04993 -12.00780 -11.48125 -11.45236 -11.22340 -10.65244 -10.54802 -10.52250 -9.05193 -8.20904 -6.31157 -0.07274 0.30253 1.41422 1.43182 1.51120 2.01331 2.41646 2.72289 3.13271 3.46610 3.72966 3.83817 3.93824 4.05948 4.10437 4.18297 4.51346 4.62113 4.81522 4.90167 4.91460 4.91845 5.09217 5.14052 5.19789 5.40060 5.50023 5.70718 5.83339 5.96730 6.23994 6.53030 6.85036 7.38133 7.92981 8.90539 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059461 B = 0.004418 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.781543 B = 6336.603489 C = 6776.333088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.036 4.036 3 C -0.021 4.021 4 N -0.238 5.238 5 N -0.359 5.359 6 C 0.336 3.664 7 N -0.710 5.710 8 C 0.137 3.863 9 C -0.106 4.106 10 C 0.028 3.972 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.961 3.039 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.268 1.268 19 C -0.201 4.201 20 H 0.096 0.904 21 H 0.080 0.920 22 H 0.098 0.902 23 H 0.201 0.799 24 H 0.409 0.591 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.264 0.736 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 15.642 -0.029 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.047 4.047 3 C -0.192 4.192 4 N -0.076 5.076 5 N -0.211 5.211 6 C 0.094 3.906 7 N -0.343 5.343 8 C 0.013 3.987 9 C -0.144 4.144 10 C -0.010 4.010 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.786 3.214 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.234 4.234 20 H 0.114 0.886 21 H 0.099 0.901 22 H 0.117 0.883 23 H 0.217 0.783 24 H 0.245 0.755 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.446 16.142 -0.026 17.036 hybrid contribution -0.282 -1.820 -0.007 1.842 sum -5.728 14.322 -0.034 15.425 Atomic orbital electron populations 1.20936 0.86220 1.05176 1.04534 1.21401 0.99980 0.91890 0.91456 1.24465 0.91519 1.00604 1.02629 1.72577 1.09194 1.18512 1.07311 1.72837 1.31930 0.94265 1.22039 1.20322 0.90564 0.88814 0.90933 1.44628 1.08971 1.01842 1.78847 1.21470 0.95886 0.79833 1.01522 1.21593 0.97504 0.93715 1.01603 1.18913 0.95237 0.91246 0.95615 1.21650 0.93847 0.92137 1.50766 0.92254 1.25904 0.97394 1.01484 0.94735 1.70064 1.16650 1.18833 1.51504 0.85559 0.78965 0.77790 0.79094 1.19329 1.20863 1.19342 1.22040 0.92346 1.01496 1.07517 0.88572 0.90066 0.88281 0.78261 0.75527 0.91574 0.91585 0.92187 0.92182 0.98186 0.98192 0.92730 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.07 71.24 0.72 -0.48 16 2 C -0.04 -0.72 5.92 -19.65 -0.12 -0.83 16 3 C -0.02 -0.44 11.03 84.84 0.94 0.49 16 4 N -0.24 -7.14 11.49 -57.20 -0.66 -7.80 16 5 N -0.36 -11.90 11.54 -55.10 -0.64 -12.53 16 6 C 0.34 10.12 7.75 133.11 1.03 11.15 16 7 N -0.71 -20.95 5.73 -344.66 -1.98 -22.93 16 8 C 0.14 4.21 4.92 86.38 0.43 4.63 16 9 C -0.11 -3.98 5.27 30.60 0.16 -3.82 16 10 C 0.03 1.36 4.97 29.85 0.15 1.51 16 11 C -0.55 -30.00 9.11 25.60 0.23 -29.77 16 12 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 13 C 0.00 0.17 5.46 84.65 0.46 0.63 16 14 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 15 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 19 C -0.20 -4.97 9.13 22.65 0.21 -4.76 16 20 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.08 0.83 8.11 -2.39 -0.02 0.82 16 22 H 0.10 0.65 8.11 -2.38 -0.02 0.63 16 23 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 24 H 0.41 11.68 8.60 -92.71 -0.80 10.89 16 25 H 0.07 1.98 7.96 -2.39 -0.02 1.96 16 26 H 0.07 1.98 7.97 -2.39 -0.02 1.96 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.16 3.44 6.84 -2.91 -0.02 3.42 16 Total: -1.00 -66.65 278.94 3.56 -63.08 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.31 Total: 10.72 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 4.20 Total: -21.24 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -2.98 Total: -97.87 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -66.65 3.56 -63.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892328460.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.522 kcal (2) G-P(sol) polarization free energy of solvation -66.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds