Wall clock time and date at job start Sun Mar 29 2020 21:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34518 * 126.58060 * 2 1 4 4 O 1.34295 * 108.42175 * 179.97438 * 3 2 1 5 5 C 1.34306 * 109.47714 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.78945 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47107 * 270.02180 * 6 5 4 8 8 C 1.47477 * 111.00047 * 265.97377 * 7 6 5 9 9 C 1.53513 * 87.92932 * 221.29743 * 8 7 6 10 10 C 1.50700 * 114.34648 * 139.68711 * 9 8 7 11 11 H 1.08005 * 119.99583 * 266.07840 * 10 9 8 12 12 C 1.37877 * 120.00435 * 86.06645 * 10 9 8 13 13 N 1.31519 * 119.99772 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00372 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46663 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46838 * 120.00391 * 14 12 10 17 17 H 1.48498 * 109.47203 * 240.00554 * 14 12 10 18 18 C 1.47481 * 111.00017 * 169.99785 * 7 6 5 19 19 C 1.34510 * 108.42113 * 0.23756 * 5 4 3 20 20 H 1.09002 * 109.47321 * 90.02253 * 1 2 3 21 21 H 1.08996 * 109.47307 * 210.02322 * 1 2 3 22 22 H 1.09004 * 109.47275 * 330.02568 * 1 2 3 23 23 H 1.08002 * 125.78628 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47152 * 150.02267 * 6 5 4 25 25 H 1.09001 * 109.46980 * 30.02368 * 6 5 4 26 26 H 1.09000 * 113.47846 * 336.05901 * 8 7 6 27 27 H 1.08998 * 113.47506 * 106.53321 * 8 7 6 28 28 H 1.09005 * 114.16820 * 272.37471 * 9 8 7 29 29 H 0.96998 * 120.00145 * 179.97438 * 13 12 10 30 30 H 1.09000 * 113.47744 * 253.47034 * 18 7 6 31 31 H 1.08996 * 113.47276 * 23.88258 * 18 7 6 32 32 H 1.07994 * 126.58284 * 179.75727 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6617 0.0006 5 6 3.6156 -0.6810 0.0004 6 6 4.8580 -1.5340 0.0003 7 7 5.2621 -1.8105 -1.3847 8 6 4.7052 -3.0938 -1.8515 9 6 6.0580 -3.3734 -2.5212 10 6 6.5294 -4.7994 -2.3977 11 1 7.1893 -5.0820 -1.5907 12 6 6.1182 -5.7435 -3.3146 13 7 5.3149 -5.3993 -4.2974 14 14 6.7021 -7.5112 -3.1611 15 1 7.5911 -7.6378 -1.9783 16 1 5.5294 -8.4072 -2.9965 17 1 7.4494 -7.8939 -4.3859 18 6 6.5966 -2.4366 -1.4310 19 6 2.3496 -1.1353 -0.0056 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3634 -0.8897 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 1.9815 2.1095 0.0004 24 1 4.6537 -2.4736 0.5136 25 1 5.6611 -1.0062 0.5146 26 1 4.4703 -3.7853 -1.0423 27 1 3.8852 -2.9792 -2.5604 28 1 6.1453 -2.9774 -3.5330 29 1 5.0259 -6.0633 -4.9428 30 1 7.3794 -1.7649 -1.7834 31 1 6.8667 -2.9517 -0.5091 32 1 2.0367 -2.1689 -0.0110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895253788.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:38 Heat of formation + Delta-G solvation = 24.113637 kcal Electronic energy + Delta-G solvation = -14559.620549 eV Core-core repulsion = 12101.031423 eV Total energy + Delta-G solvation = -2458.589125 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.48334 -40.64500 -34.99432 -34.87935 -33.13296 -30.05511 -28.23687 -27.05748 -26.55941 -24.28869 -22.16077 -20.59914 -20.47631 -18.71533 -17.92099 -17.18464 -16.62169 -16.31075 -15.76527 -15.67104 -14.64101 -14.39662 -13.97309 -13.90296 -13.85380 -13.47996 -13.28569 -13.02206 -12.87793 -12.57516 -12.31247 -11.97237 -11.72046 -11.23692 -10.92390 -10.53137 -10.47418 -9.80660 -9.27408 -8.15593 -6.27559 0.79785 1.42745 1.44638 1.56337 1.64019 2.12845 2.42892 3.13936 3.33914 3.77780 3.99024 4.02528 4.20664 4.23449 4.39636 4.50775 4.56753 4.64650 4.80522 4.84489 4.86386 4.92892 5.06457 5.14901 5.20334 5.30086 5.40357 5.61782 5.69866 5.83101 6.23728 6.26632 6.31366 6.82891 7.41687 8.94686 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046264 B = 0.005901 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.078698 B = 4743.795765 C = 5077.598951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.197 4.197 3 C -0.051 4.051 4 O -0.188 6.188 5 C -0.006 4.006 6 C 0.096 3.904 7 N -0.487 5.487 8 C 0.020 3.980 9 C 0.021 3.979 10 C -0.528 4.528 11 H 0.064 0.936 12 C 0.014 3.986 13 N -0.925 5.925 14 Si 0.960 3.040 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.012 3.988 19 C -0.221 4.221 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.238 0.762 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 9.165 10.031 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.198 4.198 3 C -0.117 4.117 4 O -0.084 6.084 5 C -0.056 4.056 6 C -0.032 4.032 7 N -0.210 5.210 8 C -0.109 4.109 9 C 0.002 3.998 10 C -0.566 4.566 11 H 0.082 0.918 12 C -0.186 4.186 13 N -0.563 5.563 14 Si 0.785 3.215 15 H -0.185 1.185 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.116 4.116 19 C -0.241 4.241 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.105 0.895 23 H 0.254 0.746 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.300 9.928 9.562 15.155 hybrid contribution 0.058 -1.757 0.116 1.762 sum -6.242 8.170 9.678 14.120 Atomic orbital electron populations 1.20205 0.87208 1.03565 1.02549 1.20862 0.98759 0.92182 1.08017 1.24562 0.79329 1.01126 1.06719 1.83983 1.30711 1.22153 1.71575 1.22336 0.96977 0.80875 1.05445 1.21129 0.92809 0.96871 0.92427 1.68831 1.05981 1.28358 1.17844 1.23871 0.99903 0.88580 0.98550 1.20043 0.92300 0.94026 0.93475 1.21405 1.29412 0.93845 1.11960 0.91757 1.25866 0.94861 1.03295 0.94543 1.70116 1.35004 1.35615 1.15596 0.85476 0.78184 0.79497 0.78327 1.18517 1.20702 1.20680 1.23882 0.91840 0.96045 0.99845 1.21693 0.92390 1.00497 1.09536 0.91310 0.91455 0.89466 0.74577 0.90113 0.88364 0.92343 0.94137 0.95385 0.92858 0.90493 0.90908 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 10.40 71.24 0.74 -0.77 16 2 C -0.20 -5.29 6.16 -19.94 -0.12 -5.42 16 3 C -0.05 -1.28 12.01 66.97 0.80 -0.47 16 4 O -0.19 -6.07 10.65 -2.44 -0.03 -6.10 16 5 C -0.01 -0.20 6.91 24.83 0.17 -0.03 16 6 C 0.10 3.24 5.34 85.56 0.46 3.70 16 7 N -0.49 -20.11 6.32 -932.45 -5.89 -25.99 16 8 C 0.02 0.94 7.28 83.58 0.61 1.55 16 9 C 0.02 1.06 3.76 -11.20 -0.04 1.02 16 10 C -0.53 -28.56 8.83 25.60 0.23 -28.34 16 11 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 12 C 0.01 0.75 5.46 84.65 0.46 1.21 16 13 N -0.92 -54.48 13.26 21.45 0.28 -54.19 16 14 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 C 0.01 0.50 7.25 83.58 0.61 1.10 16 19 C -0.22 -7.15 10.77 22.19 0.24 -6.91 16 20 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.24 3.62 8.06 -2.91 -0.02 3.59 16 24 H 0.08 2.60 7.30 -2.39 -0.02 2.58 16 25 H 0.10 2.94 8.08 -2.39 -0.02 2.92 16 26 H 0.06 2.66 7.38 -2.39 -0.02 2.64 16 27 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.03 1.62 8.11 -2.38 -0.02 1.60 16 29 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.07 2.76 7.87 -2.39 -0.02 2.74 16 32 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -63.74 276.94 1.64 -62.10 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.09 Total: 12.70 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 4.15 Total: -33.35 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -5.60 Total: -80.19 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.03 Total: -6.10 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -63.74 1.64 -62.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895253788.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.215 kcal (2) G-P(sol) polarization free energy of solvation -63.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds