Wall clock time and date at job start Sun Mar 29 2020 21:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99585 * 2 1 4 4 H 1.48500 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47255 * 300.00283 * 3 2 1 6 6 H 1.48502 * 109.47064 * 60.00187 * 3 2 1 7 7 C 1.37873 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99688 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47134 * 180.02562 * 9 7 2 11 11 C 1.47958 * 110.99900 * 170.00271 * 10 9 7 12 12 C 1.53939 * 86.17896 * 222.42017 * 11 10 9 13 13 C 1.53001 * 113.73403 * 138.08131 * 12 11 10 14 14 C 1.50701 * 109.46958 * 174.99730 * 13 12 11 15 15 C 1.41381 * 126.57424 * 90.00101 * 14 13 12 16 16 C 1.34520 * 106.83580 * 179.72986 * 15 14 13 17 17 O 1.34302 * 108.42210 * 0.26485 * 16 15 14 18 18 C 1.34302 * 109.47622 * 359.97438 * 17 16 15 19 19 C 1.47961 * 110.99645 * 70.64114 * 10 9 7 20 20 H 0.96999 * 120.00689 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46945 * 60.00631 * 9 7 2 22 22 H 1.09002 * 109.47285 * 300.00354 * 9 7 2 23 23 H 1.08995 * 113.75819 * 108.10289 * 11 10 9 24 24 H 1.08995 * 113.76086 * 336.73532 * 11 10 9 25 25 H 1.09000 * 113.73393 * 269.25520 * 12 11 10 26 26 H 1.09007 * 109.47167 * 54.99814 * 13 12 11 27 27 H 1.08999 * 109.46762 * 294.99709 * 13 12 11 28 28 H 1.08002 * 126.58570 * 359.97438 * 15 14 13 29 29 H 1.08005 * 125.78720 * 180.29666 * 16 15 14 30 30 H 1.07999 * 125.79201 * 179.97438 * 18 17 16 31 31 H 1.08996 * 113.75967 * 23.26935 * 19 10 9 32 32 H 1.08994 * 113.76217 * 251.89998 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0005 11 6 1.5165 -4.9027 0.2393 12 6 2.6931 -5.2411 1.1725 13 6 2.2692 -5.9192 2.4768 14 6 3.4953 -6.3168 3.2577 15 6 4.1749 -5.5310 4.2166 16 6 5.2037 -6.2707 4.6681 17 8 5.1868 -7.4539 4.0328 18 6 4.1547 -7.4862 3.1740 19 6 2.8984 -3.7210 1.3027 20 1 -0.4851 0.8400 0.0004 21 1 0.6243 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8897 23 1 1.4580 -5.5405 -0.6427 24 1 0.5621 -4.8001 0.7555 25 1 3.5147 -5.7553 0.6738 26 1 1.6793 -6.8073 2.2496 27 1 1.6704 -5.2268 3.0684 28 1 3.9153 -4.5305 4.5297 29 1 5.9214 -5.9651 5.4151 30 1 3.8959 -8.3124 2.5284 31 1 2.3481 -3.2729 2.1300 32 1 3.9440 -3.4148 1.2705 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899916135.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:45 Heat of formation + Delta-G solvation = 40.697529 kcal Electronic energy + Delta-G solvation = -14485.686968 eV Core-core repulsion = 12027.816974 eV Total energy + Delta-G solvation = -2457.869994 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.47116 -39.10538 -34.25910 -32.80834 -30.77180 -29.20813 -27.05467 -25.38405 -24.20285 -21.52360 -21.21295 -19.97965 -18.93501 -17.37693 -16.36399 -15.87269 -15.09195 -14.85504 -14.62892 -13.89921 -13.83012 -13.03501 -12.71656 -12.55099 -12.19299 -11.96622 -11.51795 -11.28704 -11.15736 -10.87122 -10.58252 -10.22463 -9.91585 -9.69567 -9.33115 -9.09572 -8.47297 -8.44175 -7.65269 -6.03091 -4.04517 1.81901 2.69260 3.19272 3.30780 3.37999 3.43634 4.43525 4.78191 4.82344 4.95292 5.12049 5.20064 5.33086 5.42106 5.69155 5.78079 5.85674 6.05423 6.10091 6.18262 6.18438 6.31379 6.39674 6.53344 6.62438 6.78863 6.85940 7.17277 7.28276 7.68805 7.93417 8.19087 8.48113 9.03683 9.59974 11.08291 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041359 B = 0.005786 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.829585 B = 4838.440855 C = 5282.857252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.160 3.840 10 N -0.481 5.481 11 C 0.000 4.000 12 C -0.114 4.114 13 C -0.045 4.045 14 C -0.163 4.163 15 C -0.203 4.203 16 C -0.050 4.050 17 O -0.183 6.183 18 C -0.052 4.052 19 C 0.029 3.971 20 H 0.261 0.739 21 H 0.030 0.970 22 H -0.003 1.003 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.148 0.852 29 H 0.199 0.801 30 H 0.199 0.801 31 H 0.064 0.936 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -13.333 7.955 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.034 3.966 10 N -0.204 5.204 11 C -0.129 4.129 12 C -0.133 4.133 13 C -0.083 4.083 14 C -0.164 4.164 15 C -0.222 4.222 16 C -0.118 4.118 17 O -0.079 6.079 18 C -0.120 4.120 19 C -0.100 4.100 20 H 0.070 0.930 21 H 0.048 0.952 22 H 0.015 0.985 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.165 0.835 29 H 0.216 0.784 30 H 0.215 0.785 31 H 0.082 0.918 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.950 -13.310 7.377 16.730 hybrid contribution -0.341 1.258 0.671 1.466 sum 6.608 -12.052 8.048 15.928 Atomic orbital electron populations 1.69968 1.06069 1.26657 1.51164 1.24996 0.94868 0.99359 0.95385 0.86449 0.80114 0.83399 0.77536 1.19662 1.20948 1.21062 1.21152 0.93469 0.90040 1.49949 0.92018 1.20200 0.91085 0.88956 0.96370 1.68506 1.21187 1.01932 1.28749 1.23890 0.95794 0.95172 0.98073 1.23085 0.98876 0.96841 0.94468 1.20083 0.93015 1.00443 0.94774 1.20531 1.00578 0.94594 1.00705 1.21831 0.97825 1.01759 1.00802 1.23968 1.02176 0.84362 1.01256 1.84029 1.44039 1.35416 1.44377 1.23812 0.89679 1.00795 0.97673 1.23643 1.00362 0.92724 0.93289 0.92979 0.95158 0.98503 0.90763 0.92150 0.89240 0.91162 0.90858 0.83470 0.78429 0.78458 0.91813 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.73 8.84 -34.44 -0.30 -15.03 16 8 H 0.06 1.79 7.80 -52.49 -0.41 1.38 16 9 C 0.16 4.32 4.58 -4.97 -0.02 4.29 16 10 N -0.48 -10.88 6.25 -239.74 -1.50 -12.38 16 11 C 0.00 0.00 7.54 -2.77 -0.02 -0.02 16 12 C -0.11 -1.80 3.82 -89.68 -0.34 -2.14 16 13 C -0.05 -0.60 5.59 -27.88 -0.16 -0.76 16 14 C -0.16 -2.11 5.41 -104.74 -0.57 -2.68 16 15 C -0.20 -2.56 10.87 -39.70 -0.43 -2.99 16 16 C -0.05 -0.55 12.09 29.42 0.36 -0.20 16 17 O -0.18 -2.21 10.65 5.71 0.06 -2.15 16 18 C -0.05 -0.60 12.01 29.42 0.35 -0.25 16 19 C 0.03 0.57 7.02 -2.76 -0.02 0.55 16 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 21 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.00 -0.08 7.69 -51.93 -0.40 -0.48 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.06 1.09 7.75 -51.93 -0.40 0.69 16 25 H 0.09 1.38 8.12 -51.93 -0.42 0.96 16 26 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.07 1.03 7.84 -51.93 -0.41 0.63 16 28 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.20 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.20 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.06 1.31 7.53 -51.93 -0.39 0.92 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 276.04 15.07 4.16 4.16 Total: -1.00 -31.92 276.04 -7.34 -39.26 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.52 Total: -1.74 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.25 Total: -17.73 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.76 Total: -38.80 kcal Atomic # 8 Polarization: -2.21 SS G_CDS: 0.06 Total: -2.15 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.92 -7.34 -39.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899916135.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.957 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds