Wall clock time and date at job start Sun Mar 29 2020 22:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 N 1.46902 * 109.47094 * 120.00004 * 2 1 3 5 5 C 1.46907 * 110.99670 * 275.00023 * 4 2 1 6 6 C 1.52993 * 109.46990 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47352 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99545 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00687 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00292 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99557 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47050 * 90.00046 * 11 9 7 13 13 H 1.48496 * 109.46893 * 209.99796 * 11 9 7 14 14 H 1.48496 * 109.47069 * 329.99714 * 11 9 7 15 15 C 1.50706 * 109.47238 * 239.99389 * 2 1 3 16 16 C 1.38918 * 121.00868 * 99.71630 * 15 2 1 17 17 C 1.38579 * 117.96683 * 179.78717 * 16 15 2 18 18 N 1.31958 * 119.84754 * 0.50287 * 17 16 15 19 19 N 1.28351 * 122.17704 * 359.73837 * 18 17 16 20 20 C 1.31952 * 122.18672 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.46832 * 60.00297 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.00488 * 1 2 3 24 24 H 1.00897 * 111.00496 * 151.04834 * 4 2 1 25 25 H 1.09010 * 109.46631 * 299.99749 * 5 4 2 26 26 H 1.08994 * 109.47385 * 59.99624 * 5 4 2 27 27 H 1.09000 * 109.47081 * 299.99241 * 6 5 4 28 28 H 1.08994 * 109.47683 * 59.99416 * 6 5 4 29 29 H 0.97001 * 120.00121 * 180.02562 * 10 9 7 30 30 H 1.07996 * 121.01666 * 0.02823 * 16 15 2 31 31 H 1.08001 * 120.07300 * 180.21857 * 17 16 15 32 32 H 1.08001 * 120.08155 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5327 3.5742 7 6 2.6611 0.4062 4.7511 8 1 2.3659 1.4386 4.6352 9 6 3.0974 -0.0526 5.9759 10 7 3.1546 0.7669 7.0028 11 14 3.6073 -1.8385 6.1766 12 1 5.0575 -1.9747 5.8875 13 1 3.3369 -2.2770 7.5693 14 1 2.8329 -2.6835 5.2324 15 6 2.0324 -0.7106 -1.2304 16 6 2.4604 0.0018 -2.3436 17 6 2.9142 -0.7154 -3.4391 18 7 2.9197 -2.0345 -3.4040 19 7 2.5196 -2.6926 -2.3772 20 6 2.0755 -2.0944 -1.2882 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 2.9173 -1.1205 1.0288 25 1 2.7589 1.0463 2.1181 26 1 1.0871 0.6164 2.5525 27 1 1.9200 -1.3565 3.8031 28 1 3.5915 -0.9262 3.3683 29 1 3.4619 0.4441 7.8644 30 1 2.4437 1.0816 -2.3535 31 1 3.2583 -0.1960 -4.3212 32 1 1.7474 -2.6818 -0.4434 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926132024.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:21 Heat of formation + Delta-G solvation = 47.577497 kcal Electronic energy + Delta-G solvation = -14309.721914 eV Core-core repulsion = 11884.443009 eV Total energy + Delta-G solvation = -2425.278905 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.16940 -37.35589 -34.02680 -32.81188 -32.32577 -30.58083 -28.55572 -25.31222 -24.75076 -23.70283 -20.97216 -20.51430 -17.67314 -17.03243 -16.75609 -16.14875 -15.16558 -14.95737 -14.43586 -14.31997 -13.73572 -13.45297 -13.15370 -12.71351 -12.36210 -11.95311 -11.57885 -11.44330 -11.07498 -10.94562 -10.28672 -10.18611 -10.11065 -9.88321 -9.82470 -9.70591 -9.29130 -8.58463 -8.20464 -6.09092 -4.08244 0.60796 0.80707 3.29306 3.37355 3.42331 3.43827 4.04180 4.08505 4.31624 4.42273 4.51089 4.55309 4.80716 5.11437 5.25543 5.27090 5.33622 5.53794 5.72905 5.78985 5.90151 6.05211 6.08330 6.12445 6.23708 6.66678 6.98728 7.26375 7.44064 7.58154 7.77859 8.46817 8.58714 8.94150 9.53032 11.04099 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044013 B = 0.005508 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.021293 B = 5082.699979 C = 5401.035720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.122 3.878 3 H 0.059 0.941 4 N -0.687 5.687 5 C 0.074 3.926 6 C -0.010 4.010 7 C -0.524 4.524 8 H 0.071 0.929 9 C 0.068 3.932 10 N -0.903 5.903 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.263 1.263 15 C -0.080 4.080 16 C -0.120 4.120 17 C 0.038 3.962 18 N -0.253 5.253 19 N -0.246 5.246 20 C 0.059 3.941 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.338 0.662 25 H 0.024 0.976 26 H 0.069 0.931 27 H 0.027 0.973 28 H 0.009 0.991 29 H 0.264 0.736 30 H 0.148 0.852 31 H 0.170 0.830 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 -1.079 -17.791 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 H 0.076 0.924 4 N -0.319 5.319 5 C -0.054 4.054 6 C -0.048 4.048 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.133 4.133 10 N -0.541 5.541 11 Si 0.708 3.292 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.187 1.187 15 C -0.091 4.091 16 C -0.149 4.149 17 C -0.126 4.126 18 N -0.095 5.095 19 N -0.087 5.087 20 C -0.105 4.105 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.156 0.844 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.166 0.834 31 H 0.187 0.813 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.061 -2.755 -18.219 18.678 hybrid contribution 0.820 1.192 0.814 1.660 sum -2.241 -1.564 -17.405 17.618 Atomic orbital electron populations 1.21793 0.92920 1.02866 1.01783 1.20495 0.96614 0.95474 0.86246 0.92358 1.60792 1.33256 1.34249 1.03581 1.22049 1.00512 0.93253 0.89596 1.19548 0.95667 0.96807 0.92753 1.21034 1.44612 0.97652 0.92903 0.91111 1.24997 0.94936 0.97613 0.95762 1.69906 1.47528 1.35404 1.01306 0.86761 0.79258 0.85763 0.77439 1.20389 1.21362 1.18717 1.21401 0.95580 0.95427 0.96729 1.22349 0.96923 1.02312 0.93336 1.24274 0.96538 0.92754 0.99056 1.72980 1.10618 1.07420 1.18458 1.73053 1.06775 1.31890 0.96987 1.24374 0.94835 0.93143 0.98155 0.92843 0.91697 0.91226 0.84444 0.95737 0.91280 0.95488 0.97288 0.92655 0.83385 0.81266 0.80257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.40 37.16 0.35 -1.16 16 2 C 0.12 1.47 2.86 -68.86 -0.20 1.27 16 3 H 0.06 0.68 7.71 -51.93 -0.40 0.28 16 4 N -0.69 -10.28 5.77 -107.95 -0.62 -10.91 16 5 C 0.07 1.37 5.42 -3.82 -0.02 1.35 16 6 C -0.01 -0.23 4.30 -27.89 -0.12 -0.35 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 11 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.26 -6.20 6.54 56.52 0.37 -5.84 16 15 C -0.08 -0.89 4.74 -104.24 -0.49 -1.39 16 16 C -0.12 -1.13 9.90 -39.20 -0.39 -1.51 16 17 C 0.04 0.37 11.31 -17.37 -0.20 0.18 16 18 N -0.25 -3.38 11.50 30.55 0.35 -3.03 16 19 N -0.25 -3.50 11.50 30.55 0.35 -3.15 16 20 C 0.06 0.74 10.35 -17.38 -0.18 0.56 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.83 7.45 -51.93 -0.39 0.45 16 24 H 0.34 4.95 8.02 -39.29 -0.31 4.63 16 25 H 0.02 0.46 8.06 -51.92 -0.42 0.04 16 26 H 0.07 1.30 7.44 -51.93 -0.39 0.91 16 27 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 28 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.18 2.10 7.80 -52.49 -0.41 1.70 16 LS Contribution 274.31 15.07 4.13 4.13 Total: -1.00 -31.43 274.31 -5.72 -37.15 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.36 Total: -0.17 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.68 Total: -14.13 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.85 Total: -43.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.43 -5.72 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132024.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.727 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds