Wall clock time and date at job start Sun Mar 29 2020 22:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 N 1.46902 * 109.47094 * 120.00004 * 2 1 3 5 5 C 1.46907 * 110.99670 * 275.00023 * 4 2 1 6 6 C 1.52993 * 109.46990 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47352 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99545 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00687 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00292 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99557 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47050 * 90.00046 * 11 9 7 13 13 H 1.48496 * 109.46893 * 209.99796 * 11 9 7 14 14 H 1.48496 * 109.47069 * 329.99714 * 11 9 7 15 15 C 1.50706 * 109.47238 * 239.99389 * 2 1 3 16 16 C 1.38918 * 121.00868 * 99.71630 * 15 2 1 17 17 C 1.38579 * 117.96683 * 179.78717 * 16 15 2 18 18 N 1.31958 * 119.84754 * 0.50287 * 17 16 15 19 19 N 1.28351 * 122.17704 * 359.73837 * 18 17 16 20 20 C 1.31952 * 122.18672 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.46832 * 60.00297 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.00488 * 1 2 3 24 24 H 1.00897 * 111.00496 * 151.04834 * 4 2 1 25 25 H 1.09010 * 109.46631 * 299.99749 * 5 4 2 26 26 H 1.08994 * 109.47385 * 59.99624 * 5 4 2 27 27 H 1.09000 * 109.47081 * 299.99241 * 6 5 4 28 28 H 1.08994 * 109.47683 * 59.99416 * 6 5 4 29 29 H 0.97001 * 120.00121 * 180.02562 * 10 9 7 30 30 H 1.07996 * 121.01666 * 0.02823 * 16 15 2 31 31 H 1.08001 * 120.07300 * 180.21857 * 17 16 15 32 32 H 1.08001 * 120.08155 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5327 3.5742 7 6 2.6611 0.4062 4.7511 8 1 2.3659 1.4386 4.6352 9 6 3.0974 -0.0526 5.9759 10 7 3.1546 0.7669 7.0028 11 14 3.6073 -1.8385 6.1766 12 1 5.0575 -1.9747 5.8875 13 1 3.3369 -2.2770 7.5693 14 1 2.8329 -2.6835 5.2324 15 6 2.0324 -0.7106 -1.2304 16 6 2.4604 0.0018 -2.3436 17 6 2.9142 -0.7154 -3.4391 18 7 2.9197 -2.0345 -3.4040 19 7 2.5196 -2.6926 -2.3772 20 6 2.0755 -2.0944 -1.2882 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 2.9173 -1.1205 1.0288 25 1 2.7589 1.0463 2.1181 26 1 1.0871 0.6164 2.5525 27 1 1.9200 -1.3565 3.8031 28 1 3.5915 -0.9262 3.3683 29 1 3.4619 0.4441 7.8644 30 1 2.4437 1.0816 -2.3535 31 1 3.2583 -0.1960 -4.3212 32 1 1.7474 -2.6818 -0.4434 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926132024.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:21 Heat of formation + Delta-G solvation = 25.045170 kcal Electronic energy + Delta-G solvation = -14310.698989 eV Core-core repulsion = 11884.443009 eV Total energy + Delta-G solvation = -2426.255980 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.04096 -38.49273 -35.62540 -34.18397 -33.50061 -31.92321 -29.93895 -26.56228 -25.63929 -25.11040 -22.26811 -21.94161 -18.99791 -18.47232 -17.94777 -17.08002 -16.31229 -16.19638 -15.88339 -15.54335 -15.06208 -14.66660 -14.47009 -14.25436 -13.70753 -13.08777 -13.03270 -12.91582 -12.45343 -11.97238 -11.85846 -11.74348 -11.65793 -11.41184 -11.09429 -10.83795 -10.76850 -10.66001 -9.43107 -8.29930 -6.34171 -0.23469 -0.00008 1.36712 1.39431 1.51631 2.36469 2.57954 3.05580 3.06360 3.23664 3.38398 3.64982 3.80422 4.00522 4.27460 4.29941 4.46547 4.54373 4.59230 4.70867 4.87344 4.91485 4.98204 5.05210 5.28438 5.32558 5.35086 5.48591 5.64160 6.06405 6.23835 6.41183 6.74585 7.31105 7.71994 8.86591 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044013 B = 0.005508 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.021293 B = 5082.699979 C = 5401.035720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.127 3.873 3 H 0.069 0.931 4 N -0.687 5.687 5 C 0.089 3.911 6 C -0.007 4.007 7 C -0.532 4.532 8 H 0.035 0.965 9 C 0.007 3.993 10 N -0.951 5.951 11 Si 0.950 3.050 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.247 1.247 15 C -0.086 4.086 16 C -0.105 4.105 17 C 0.043 3.957 18 N -0.285 5.285 19 N -0.280 5.280 20 C 0.053 3.947 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.341 0.659 25 H 0.022 0.978 26 H 0.064 0.936 27 H 0.024 0.976 28 H 0.016 0.984 29 H 0.266 0.734 30 H 0.183 0.817 31 H 0.208 0.792 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 -1.395 -19.605 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.017 3.983 3 H 0.087 0.913 4 N -0.319 5.319 5 C -0.040 4.040 6 C -0.044 4.044 7 C -0.570 4.570 8 H 0.053 0.947 9 C -0.190 4.190 10 N -0.591 5.591 11 Si 0.773 3.227 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.170 1.170 15 C -0.097 4.097 16 C -0.134 4.134 17 C -0.122 4.122 18 N -0.126 5.126 19 N -0.120 5.120 20 C -0.112 4.112 21 H 0.094 0.906 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.159 0.841 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.201 0.799 31 H 0.225 0.775 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.855 -3.086 -20.066 20.502 hybrid contribution 0.729 1.420 1.314 2.067 sum -2.126 -1.667 -18.752 18.946 Atomic orbital electron populations 1.21786 0.92325 1.02726 1.02343 1.20496 0.96988 0.95663 0.85169 0.91325 1.60661 1.33543 1.33711 1.03953 1.21681 0.99831 0.93035 0.89440 1.19449 0.96126 0.95985 0.92878 1.21409 1.43696 0.97060 0.94882 0.94695 1.25955 0.95110 1.02513 0.95418 1.70055 1.49182 1.37842 1.02055 0.85662 0.79359 0.79950 0.77693 1.19368 1.21128 1.17004 1.21309 0.96395 0.94936 0.97106 1.22741 0.94700 1.03949 0.92055 1.24873 0.95196 0.91695 1.00409 1.72882 1.11753 1.09371 1.18616 1.72986 1.08223 1.33067 0.97736 1.24391 0.94999 0.93914 0.97866 0.90603 0.92221 0.92335 0.84078 0.95988 0.91758 0.95750 0.96608 0.92484 0.79919 0.77547 0.80391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.40 71.98 0.68 -2.03 16 2 C 0.13 2.73 2.86 44.17 0.13 2.86 16 3 H 0.07 1.39 7.71 -2.39 -0.02 1.37 16 4 N -0.69 -19.36 5.77 -495.43 -2.86 -22.22 16 5 C 0.09 3.21 5.42 86.30 0.47 3.68 16 6 C -0.01 -0.30 4.30 29.85 0.13 -0.17 16 7 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 9 C 0.01 0.41 5.47 84.66 0.46 0.87 16 10 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 11 Si 0.95 44.12 27.47 68.60 1.88 46.00 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 13 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 15 C -0.09 -1.71 4.74 -19.62 -0.09 -1.81 16 16 C -0.11 -1.59 9.90 22.51 0.22 -1.36 16 17 C 0.04 0.71 11.31 84.76 0.96 1.67 16 18 N -0.29 -7.18 11.50 -57.26 -0.66 -7.84 16 19 N -0.28 -7.73 11.50 -57.27 -0.66 -8.39 16 20 C 0.05 1.27 10.35 84.75 0.88 2.14 16 21 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.06 1.26 8.14 -2.38 -0.02 1.25 16 23 H 0.06 1.31 7.45 -2.39 -0.02 1.30 16 24 H 0.34 9.35 8.02 -89.70 -0.72 8.63 16 25 H 0.02 0.80 8.06 -2.38 -0.02 0.78 16 26 H 0.06 2.38 7.44 -2.39 -0.02 2.36 16 27 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 28 H 0.02 0.69 7.57 -2.39 -0.02 0.67 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.21 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.18 4.07 7.80 -2.91 -0.02 4.05 16 Total: -1.00 -68.82 274.31 2.42 -66.41 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.33 Total: 8.88 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 4.08 Total: -23.96 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -3.88 Total: -97.33 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -68.82 2.42 -66.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132024.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.451 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds