Wall clock time and date at job start Sun Mar 29 2020 22:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47132 * 2 1 4 4 C 1.36944 * 120.00028 * 274.87681 * 3 2 1 5 5 H 1.07995 * 119.99982 * 183.58255 * 4 3 2 6 6 C 1.38810 * 119.99664 * 3.85102 * 4 3 2 7 7 N 1.31620 * 120.00255 * 11.53431 * 6 4 3 8 8 Si 1.86805 * 119.99971 * 191.53245 * 6 4 3 9 9 H 1.48500 * 109.46789 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47284 * 120.00178 * 8 6 4 11 11 H 1.48500 * 109.47251 * 240.00572 * 8 6 4 12 12 C 1.46497 * 119.99984 * 94.87708 * 3 2 1 13 13 H 1.09003 * 109.47100 * 185.62420 * 12 3 2 14 14 C 1.52996 * 109.46967 * 305.62033 * 12 3 2 15 15 C 1.50699 * 109.47196 * 65.62398 * 12 3 2 16 16 N 1.31797 * 119.12263 * 317.55637 * 15 12 3 17 17 C 1.32336 * 120.81607 * 179.76072 * 16 15 12 18 18 C 1.38599 * 119.10376 * 0.50261 * 17 16 15 19 19 C 1.38588 * 118.40030 * 359.74898 * 18 17 16 20 20 N 1.31791 * 119.12228 * 137.82332 * 15 12 3 21 21 H 1.08997 * 109.46575 * 304.02207 * 1 2 3 22 22 H 1.08998 * 109.47303 * 64.02213 * 1 2 3 23 23 H 1.08996 * 109.47131 * 184.02539 * 1 2 3 24 24 H 1.09002 * 109.47034 * 240.00098 * 2 1 3 25 25 H 1.08995 * 109.47724 * 120.00086 * 2 1 3 26 26 H 0.96997 * 119.99906 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47781 * 300.00538 * 14 12 3 28 28 H 1.09003 * 109.47137 * 60.00756 * 14 12 3 29 29 H 1.09006 * 109.47311 * 179.97438 * 14 12 3 30 30 H 1.07997 * 120.44583 * 180.27729 * 17 16 15 31 31 H 1.08006 * 120.79473 * 179.77317 * 18 17 16 32 32 H 1.08005 * 120.44957 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1515 2.0604 -1.1817 5 1 2.5658 3.0577 -1.1875 6 6 1.7489 1.4690 -2.3712 7 7 1.0369 0.3623 -2.3480 8 14 2.2174 2.2441 -4.0050 9 1 3.0138 3.4732 -3.7595 10 1 3.0251 1.2813 -4.7962 11 1 0.9862 2.5937 -4.7582 12 6 2.3642 2.0359 1.2641 13 1 2.6096 3.0812 1.0767 14 6 1.1742 1.9553 2.2224 15 6 3.5528 1.3434 1.8797 16 7 3.6056 0.0266 1.8667 17 6 4.6357 -0.6158 2.3935 18 6 5.6612 0.1148 2.9727 19 6 5.5675 1.4975 2.9717 20 7 4.5091 2.0706 2.4215 21 1 -0.3632 0.5750 0.8518 22 1 -0.3634 0.4501 -0.9238 23 1 -0.3633 -1.0251 0.0721 24 1 1.8933 -0.5138 -0.8900 25 1 1.8935 -0.5138 0.8899 26 1 0.7553 -0.0507 -3.1792 27 1 0.3146 2.4561 1.7772 28 1 0.9288 0.9100 2.4099 29 1 1.4317 2.4420 3.1632 30 1 4.6750 -1.6949 2.3755 31 1 6.5130 -0.3815 3.4139 32 1 6.3475 2.0993 3.4144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929463949.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:59 Heat of formation + Delta-G solvation = 90.757205 kcal Electronic energy + Delta-G solvation = -15441.831551 eV Core-core repulsion = 13018.425059 eV Total energy + Delta-G solvation = -2423.406492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53048 -36.47772 -33.21454 -32.89520 -30.73993 -29.37924 -28.37442 -24.45880 -24.17827 -23.30556 -21.41415 -19.66221 -17.24930 -16.55426 -16.20079 -15.22990 -14.72168 -14.34586 -13.72581 -13.38354 -13.16396 -12.91605 -12.04224 -11.78474 -11.64997 -11.22625 -10.89078 -10.64554 -10.55572 -10.37699 -10.23056 -10.22471 -9.85472 -9.42957 -9.27982 -9.03041 -8.52269 -8.17551 -6.78347 -5.54730 -3.01228 1.35743 1.54737 3.41748 3.49158 3.50877 4.24215 4.43464 4.56957 4.68164 4.92257 5.29744 5.45522 5.48234 5.61400 5.82191 6.04546 6.15751 6.18558 6.42884 6.71036 6.80464 6.98239 7.07988 7.21896 7.43026 7.52389 7.55384 7.76694 8.12516 8.43190 8.57173 8.69069 9.38568 9.96156 10.39153 11.36770 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031368 B = 0.009740 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.403003 B = 2874.117841 C = 3147.198505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.158 3.842 3 N -0.579 5.579 4 C -0.243 4.243 5 H 0.074 0.926 6 C -0.008 4.008 7 N -0.898 5.898 8 Si 0.905 3.095 9 H -0.281 1.281 10 H -0.292 1.292 11 H -0.292 1.292 12 C 0.233 3.767 13 H 0.086 0.914 14 C -0.150 4.150 15 C 0.325 3.675 16 N -0.490 5.490 17 C 0.141 3.859 18 C -0.255 4.255 19 C 0.140 3.860 20 N -0.525 5.525 21 H 0.009 0.991 22 H 0.089 0.911 23 H 0.011 0.989 24 H 0.089 0.911 25 H 0.040 0.960 26 H 0.247 0.753 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.159 0.841 31 H 0.136 0.864 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 -0.916 9.823 11.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.034 3.966 3 N -0.299 5.299 4 C -0.372 4.372 5 H 0.091 0.909 6 C -0.203 4.203 7 N -0.546 5.546 8 Si 0.736 3.264 9 H -0.206 1.206 10 H -0.219 1.219 11 H -0.219 1.219 12 C 0.121 3.879 13 H 0.104 0.896 14 C -0.210 4.210 15 C 0.056 3.944 16 N -0.203 5.203 17 C -0.026 4.026 18 C -0.277 4.277 19 C -0.027 4.027 20 N -0.240 5.240 21 H 0.028 0.972 22 H 0.107 0.893 23 H 0.030 0.970 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.176 0.824 31 H 0.154 0.846 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.074 -0.543 9.214 10.533 hybrid contribution 1.194 -0.200 -0.480 1.302 sum 6.268 -0.743 8.734 10.776 Atomic orbital electron populations 1.22606 0.99819 0.96991 1.01305 1.21221 0.91749 0.83505 1.00148 1.44229 1.73654 1.12183 0.99792 1.19471 1.34680 0.98674 0.84353 0.90856 1.24771 0.99843 0.98049 0.97682 1.70266 1.39085 1.20929 1.24326 0.86148 0.77755 0.78190 0.84292 1.20642 1.21872 1.21883 1.19087 0.87177 0.94922 0.86758 0.89568 1.22279 0.98889 1.02029 0.97793 1.25239 0.94950 0.86730 0.87476 1.68542 1.24969 1.11146 1.15649 1.23319 0.88723 1.00925 0.89667 1.22726 1.02274 0.96802 1.05932 1.23118 0.94685 0.92561 0.92328 1.68364 1.02556 1.42049 1.11023 0.97208 0.89270 0.97039 0.89353 0.94212 0.94197 0.91612 0.92305 0.94126 0.82383 0.84583 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.40 37.16 0.35 -3.28 16 2 C 0.16 3.99 4.53 -4.04 -0.02 3.98 16 3 N -0.58 -14.74 2.42 -166.98 -0.40 -15.14 16 4 C -0.24 -6.69 9.77 -15.06 -0.15 -6.84 16 5 H 0.07 1.99 7.70 -52.49 -0.40 1.58 16 6 C -0.01 -0.22 5.29 -17.43 -0.09 -0.31 16 7 N -0.90 -25.43 7.34 55.49 0.41 -25.02 16 8 Si 0.91 22.10 29.57 -169.99 -5.03 17.07 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 C 0.23 5.10 3.15 -69.09 -0.22 4.88 16 13 H 0.09 1.90 7.77 -51.93 -0.40 1.49 16 14 C -0.15 -2.89 7.98 37.16 0.30 -2.59 16 15 C 0.33 6.68 6.62 -157.20 -1.04 5.64 16 16 N -0.49 -9.73 7.33 -10.73 -0.08 -9.81 16 17 C 0.14 2.18 11.31 -17.20 -0.19 1.98 16 18 C -0.25 -3.34 10.17 -39.32 -0.40 -3.74 16 19 C 0.14 2.03 11.30 -17.20 -0.19 1.84 16 20 N -0.53 -9.78 10.32 -10.73 -0.11 -9.89 16 21 H 0.01 0.21 5.91 -51.93 -0.31 -0.10 16 22 H 0.09 2.44 5.93 -51.93 -0.31 2.13 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 2.53 5.81 -51.93 -0.30 2.23 16 25 H 0.04 0.96 5.37 -51.93 -0.28 0.68 16 26 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.06 1.28 7.86 -51.93 -0.41 0.87 16 28 H 0.06 1.17 6.66 -51.93 -0.35 0.82 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.16 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 259.61 15.07 3.91 3.91 Total: -1.00 -30.43 259.61 -6.97 -37.40 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.01 Total: -0.08 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.66 Total: 1.55 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.19 Total: -59.86 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.43 -6.97 -37.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929463949.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.158 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds