Wall clock time and date at job start Sun Mar 29 2020 22:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47132 * 2 1 4 4 C 1.36944 * 120.00028 * 274.87681 * 3 2 1 5 5 H 1.07995 * 119.99982 * 183.58255 * 4 3 2 6 6 C 1.38810 * 119.99664 * 3.85102 * 4 3 2 7 7 N 1.31620 * 120.00255 * 11.53431 * 6 4 3 8 8 Si 1.86805 * 119.99971 * 191.53245 * 6 4 3 9 9 H 1.48500 * 109.46789 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47284 * 120.00178 * 8 6 4 11 11 H 1.48500 * 109.47251 * 240.00572 * 8 6 4 12 12 C 1.46497 * 119.99984 * 94.87708 * 3 2 1 13 13 H 1.09003 * 109.47100 * 185.62420 * 12 3 2 14 14 C 1.52996 * 109.46967 * 305.62033 * 12 3 2 15 15 C 1.50699 * 109.47196 * 65.62398 * 12 3 2 16 16 N 1.31797 * 119.12263 * 317.55637 * 15 12 3 17 17 C 1.32336 * 120.81607 * 179.76072 * 16 15 12 18 18 C 1.38599 * 119.10376 * 0.50261 * 17 16 15 19 19 C 1.38588 * 118.40030 * 359.74898 * 18 17 16 20 20 N 1.31791 * 119.12228 * 137.82332 * 15 12 3 21 21 H 1.08997 * 109.46575 * 304.02207 * 1 2 3 22 22 H 1.08998 * 109.47303 * 64.02213 * 1 2 3 23 23 H 1.08996 * 109.47131 * 184.02539 * 1 2 3 24 24 H 1.09002 * 109.47034 * 240.00098 * 2 1 3 25 25 H 1.08995 * 109.47724 * 120.00086 * 2 1 3 26 26 H 0.96997 * 119.99906 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47781 * 300.00538 * 14 12 3 28 28 H 1.09003 * 109.47137 * 60.00756 * 14 12 3 29 29 H 1.09006 * 109.47311 * 179.97438 * 14 12 3 30 30 H 1.07997 * 120.44583 * 180.27729 * 17 16 15 31 31 H 1.08006 * 120.79473 * 179.77317 * 18 17 16 32 32 H 1.08005 * 120.44957 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1515 2.0604 -1.1817 5 1 2.5658 3.0577 -1.1875 6 6 1.7489 1.4690 -2.3712 7 7 1.0369 0.3623 -2.3480 8 14 2.2174 2.2441 -4.0050 9 1 3.0138 3.4732 -3.7595 10 1 3.0251 1.2813 -4.7962 11 1 0.9862 2.5937 -4.7582 12 6 2.3642 2.0359 1.2641 13 1 2.6096 3.0812 1.0767 14 6 1.1742 1.9553 2.2224 15 6 3.5528 1.3434 1.8797 16 7 3.6056 0.0266 1.8667 17 6 4.6357 -0.6158 2.3935 18 6 5.6612 0.1148 2.9727 19 6 5.5675 1.4975 2.9717 20 7 4.5091 2.0706 2.4215 21 1 -0.3632 0.5750 0.8518 22 1 -0.3634 0.4501 -0.9238 23 1 -0.3633 -1.0251 0.0721 24 1 1.8933 -0.5138 -0.8900 25 1 1.8935 -0.5138 0.8899 26 1 0.7553 -0.0507 -3.1792 27 1 0.3146 2.4561 1.7772 28 1 0.9288 0.9100 2.4099 29 1 1.4317 2.4420 3.1632 30 1 4.6750 -1.6949 2.3755 31 1 6.5130 -0.3815 3.4139 32 1 6.3475 2.0993 3.4144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929463949.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:58 Heat of formation + Delta-G solvation = 72.249000 kcal Electronic energy + Delta-G solvation = -15442.634127 eV Core-core repulsion = 13018.425059 eV Total energy + Delta-G solvation = -2424.209068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.83445 -38.28661 -34.63731 -34.50679 -32.36240 -31.17638 -30.22351 -26.17633 -25.48282 -24.92489 -23.20218 -21.38092 -18.93169 -18.11328 -17.62576 -16.92916 -16.09878 -15.77128 -15.60031 -14.88809 -14.83436 -14.24005 -13.82604 -13.71721 -13.29740 -13.10066 -12.68860 -12.53469 -12.26772 -12.20465 -11.81195 -11.78210 -11.68887 -11.35885 -11.06304 -10.29548 -10.26982 -9.89066 -8.76195 -7.62652 -5.10030 0.11602 0.35739 1.46706 1.48517 1.57701 2.51908 2.95945 3.12789 3.38121 3.42777 3.86960 3.88228 4.27003 4.36431 4.41691 4.54558 4.65897 4.84841 4.93665 5.06539 5.17584 5.27121 5.34018 5.43937 5.55423 5.59782 5.71807 6.05422 6.28789 6.39757 6.49587 7.30353 7.37115 7.99092 8.37573 9.27037 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031368 B = 0.009740 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.403003 B = 2874.117841 C = 3147.198505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.172 3.828 3 N -0.594 5.594 4 C -0.254 4.254 5 H 0.069 0.931 6 C -0.057 4.057 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.275 1.275 10 H -0.296 1.296 11 H -0.292 1.292 12 C 0.228 3.772 13 H 0.074 0.926 14 C -0.136 4.136 15 C 0.301 3.699 16 N -0.526 5.526 17 C 0.123 3.877 18 C -0.226 4.226 19 C 0.130 3.870 20 N -0.547 5.547 21 H 0.021 0.979 22 H 0.059 0.941 23 H 0.021 0.979 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.241 0.759 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.189 0.811 31 H 0.186 0.814 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.798 -1.101 11.403 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.048 3.952 3 N -0.315 5.315 4 C -0.384 4.384 5 H 0.087 0.913 6 C -0.250 4.250 7 N -0.565 5.565 8 Si 0.794 3.206 9 H -0.200 1.200 10 H -0.223 1.223 11 H -0.219 1.219 12 C 0.117 3.883 13 H 0.092 0.908 14 C -0.195 4.195 15 C 0.032 3.968 16 N -0.240 5.240 17 C -0.042 4.042 18 C -0.248 4.248 19 C -0.035 4.035 20 N -0.262 5.262 21 H 0.039 0.961 22 H 0.078 0.922 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.206 0.794 31 H 0.204 0.796 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.956 -0.721 10.841 12.900 hybrid contribution 0.764 -0.166 -0.812 1.127 sum 7.720 -0.887 10.028 12.687 Atomic orbital electron populations 1.22439 0.99516 0.97499 1.00135 1.20940 0.91861 0.83623 0.98808 1.44277 1.74644 1.12100 1.00489 1.19685 1.34271 0.98779 0.85633 0.91263 1.25427 1.00355 0.98950 1.00293 1.70467 1.39846 1.21881 1.24324 0.85224 0.77164 0.77431 0.80738 1.19975 1.22311 1.21931 1.19140 0.88835 0.94246 0.86047 0.90771 1.22091 0.97599 1.01653 0.98174 1.24491 0.95151 0.87291 0.89901 1.68354 1.27465 1.11026 1.17201 1.23945 0.88432 1.02542 0.89312 1.23215 1.02325 0.96167 1.03059 1.23903 0.94209 0.94025 0.91369 1.68289 1.03469 1.42640 1.11844 0.96052 0.92203 0.95965 0.92981 0.92953 0.94861 0.92361 0.93018 0.91761 0.79394 0.79648 0.78342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.79 9.40 71.98 0.68 -6.11 16 2 C 0.17 8.87 4.53 86.38 0.39 9.26 16 3 N -0.59 -30.82 2.42 -682.21 -1.65 -32.47 16 4 C -0.25 -14.32 9.77 84.03 0.82 -13.50 16 5 H 0.07 3.85 7.70 -2.91 -0.02 3.83 16 6 C -0.06 -3.21 5.29 84.86 0.45 -2.76 16 7 N -0.92 -53.33 7.34 21.65 0.16 -53.17 16 8 Si 0.96 46.33 29.57 68.60 2.03 48.36 16 9 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 12 C 0.23 10.05 3.15 44.24 0.14 10.19 16 13 H 0.07 3.34 7.77 -2.39 -0.02 3.33 16 14 C -0.14 -5.19 7.98 71.98 0.57 -4.61 16 15 C 0.30 12.18 6.62 138.75 0.92 13.10 16 16 N -0.53 -20.34 7.33 -187.85 -1.38 -21.71 16 17 C 0.12 3.45 11.31 84.70 0.96 4.41 16 18 C -0.23 -4.91 10.17 22.44 0.23 -4.68 16 19 C 0.13 3.30 11.30 84.70 0.96 4.26 16 20 N -0.55 -19.45 10.32 -187.85 -1.94 -21.39 16 21 H 0.02 0.96 5.91 -2.39 -0.01 0.95 16 22 H 0.06 3.35 5.93 -2.39 -0.01 3.34 16 23 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.05 3.07 5.81 -2.39 -0.01 3.06 16 25 H 0.05 2.55 5.37 -2.39 -0.01 2.54 16 26 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 27 H 0.06 2.26 7.86 -2.39 -0.02 2.24 16 28 H 0.05 2.03 6.66 -2.39 -0.02 2.01 16 29 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.19 3.91 8.06 -2.91 -0.02 3.88 16 31 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.20 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -67.59 259.61 4.44 -63.15 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.11 Total: 7.67 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.11 Total: 9.57 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -4.81 Total: -128.75 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -67.59 4.44 -63.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929463949.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.397 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds