Wall clock time and date at job start Sun Mar 29 2020 22:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47336 * 2 1 4 4 C 1.50705 * 109.46888 * 239.99701 * 2 1 3 5 5 N 1.31794 * 119.12416 * 284.73025 * 4 2 1 6 6 C 1.32333 * 120.81870 * 179.75808 * 5 4 2 7 7 C 1.38595 * 119.10078 * 0.50875 * 6 5 4 8 8 C 1.38600 * 118.40314 * 359.74578 * 7 6 5 9 9 N 1.31789 * 119.12067 * 105.00081 * 4 2 1 10 10 N 1.46906 * 109.46986 * 120.00375 * 2 1 3 11 11 C 1.46906 * 110.99726 * 176.04541 * 10 2 1 12 12 C 1.46902 * 110.99514 * 299.99278 * 10 2 1 13 13 C 1.50706 * 109.46577 * 170.00394 * 12 10 2 14 14 H 1.07995 * 120.00167 * 359.72326 * 13 12 10 15 15 C 1.37879 * 119.99394 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 H 1.08995 * 109.46878 * 59.99609 * 1 2 3 22 22 H 1.08996 * 109.47140 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46757 * 300.00223 * 1 2 3 24 24 H 1.08006 * 120.44868 * 180.27996 * 6 5 4 25 25 H 1.08007 * 120.79722 * 179.77193 * 7 6 5 26 26 H 1.08003 * 120.44860 * 180.02562 * 8 7 6 27 27 H 1.08997 * 109.46955 * 183.94997 * 11 10 2 28 28 H 1.09001 * 109.46689 * 303.94799 * 11 10 2 29 29 H 1.08992 * 109.47393 * 63.94993 * 11 10 2 30 30 H 1.09000 * 109.47263 * 50.00594 * 12 10 2 31 31 H 1.09001 * 109.47582 * 289.99874 * 12 10 2 32 32 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.9701 -2.0260 -1.2819 6 6 2.3972 -2.6837 -2.3478 7 6 2.9243 -1.9711 -3.4132 8 6 2.9778 -0.5892 -3.3201 9 7 2.5270 -0.0002 -2.2242 10 7 2.0197 -0.6926 1.1994 11 6 3.4851 -0.7946 1.1870 12 6 1.5487 -0.0264 2.4211 13 6 1.8581 -0.8912 3.6159 14 1 2.3508 -1.8427 3.4808 15 6 1.5064 -0.4704 4.8809 16 7 0.9006 0.6854 5.0448 17 14 1.8905 -1.5420 6.3620 18 1 3.3570 -1.7572 6.4503 19 1 1.4132 -0.8691 7.5968 20 1 1.2058 -2.8517 6.2163 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 2.3392 -3.7616 -2.3854 25 1 3.2843 -2.4803 -4.2951 26 1 3.3817 -0.0012 -4.1310 27 1 3.8164 -1.3722 2.0499 28 1 3.8069 -1.2917 0.2718 29 1 3.9193 0.2042 1.2300 30 1 0.4723 0.1324 2.3564 31 1 2.0520 0.9345 2.5281 32 1 0.6529 0.9812 5.9348 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929809697.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:14 Heat of formation + Delta-G solvation = 60.022445 kcal Electronic energy + Delta-G solvation = -14895.553268 eV Core-core repulsion = 12470.814016 eV Total energy + Delta-G solvation = -2424.739252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.91678 -37.02180 -33.52435 -33.00733 -31.81546 -29.93338 -27.34831 -24.57152 -24.42086 -24.30001 -21.90967 -19.68173 -17.34558 -16.91556 -16.18414 -15.20239 -15.10870 -14.53716 -14.36184 -13.77922 -13.44389 -13.37712 -12.72666 -12.06264 -11.70512 -11.62436 -11.04400 -10.99978 -10.83178 -10.68819 -10.62252 -10.56356 -10.23938 -9.73910 -9.42001 -9.11798 -8.98905 -8.36848 -7.17817 -5.98012 -3.98332 1.01673 1.24828 3.37548 3.41023 3.44531 3.91911 4.06795 4.30338 4.48823 4.65420 5.03173 5.06336 5.18164 5.37289 5.43684 5.75009 5.80737 5.90813 6.05697 6.22513 6.35268 6.45200 6.51514 6.76655 6.77305 7.16553 7.32187 7.37581 7.84225 8.10455 8.23218 8.36239 8.59147 9.08691 9.65003 11.12995 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051237 B = 0.006626 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.347460 B = 4224.964464 C = 4448.680922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.145 3.855 3 H 0.056 0.944 4 C 0.341 3.659 5 N -0.480 5.480 6 C 0.142 3.858 7 C -0.245 4.245 8 C 0.142 3.858 9 N -0.523 5.523 10 N -0.519 5.519 11 C 0.044 3.956 12 C 0.189 3.811 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.164 0.836 25 H 0.142 0.858 26 H 0.163 0.837 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.011 0.989 30 H 0.040 0.960 31 H -0.009 1.009 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 -3.532 -15.471 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.034 3.966 3 H 0.074 0.926 4 C 0.074 3.926 5 N -0.193 5.193 6 C -0.025 4.025 7 C -0.267 4.267 8 C -0.025 4.025 9 N -0.238 5.238 10 N -0.245 5.245 11 C -0.105 4.105 12 C 0.065 3.935 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.202 1.202 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.097 0.903 24 H 0.182 0.818 25 H 0.160 0.840 26 H 0.180 0.820 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.029 0.971 30 H 0.058 0.942 31 H 0.009 0.991 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.409 -3.411 -14.501 15.090 hybrid contribution 0.973 -0.204 -0.090 0.998 sum 3.382 -3.615 -14.590 15.407 Atomic orbital electron populations 1.21827 0.92727 1.03125 1.01816 1.20314 0.96145 0.94114 0.86055 0.92612 1.23361 0.88927 0.86763 0.93579 1.68438 1.15863 1.10049 1.24981 1.23364 0.90071 1.01109 0.87929 1.22851 1.04953 0.96858 1.02070 1.23151 0.92064 0.92468 0.94791 1.68276 1.11674 1.42085 1.01731 1.62166 1.09107 1.51818 1.01368 1.22149 0.88814 0.98834 1.00682 1.19874 0.96336 0.92527 0.84792 1.21112 1.38189 1.04657 0.90309 0.91879 1.24969 0.95391 0.95249 0.98982 1.69947 1.41117 1.20125 1.22772 0.86555 0.78606 0.80530 0.81680 1.20370 1.21403 1.20160 0.93379 0.91319 0.90330 0.81834 0.84041 0.81982 0.90500 0.94743 0.97093 0.94168 0.99094 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.97 37.16 0.33 -2.18 16 2 C 0.14 2.88 2.48 -68.86 -0.17 2.71 16 3 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 4 C 0.34 6.14 5.00 -157.20 -0.79 5.36 16 5 N -0.48 -8.33 9.65 -10.72 -0.10 -8.43 16 6 C 0.14 1.82 11.30 -17.20 -0.19 1.63 16 7 C -0.25 -2.58 10.17 -39.32 -0.40 -2.98 16 8 C 0.14 1.71 11.31 -17.20 -0.19 1.51 16 9 N -0.52 -8.51 10.32 -10.72 -0.11 -8.62 16 10 N -0.52 -11.88 4.43 -237.72 -1.05 -12.93 16 11 C 0.04 0.95 9.07 60.07 0.54 1.49 16 12 C 0.19 5.01 4.54 -4.97 -0.02 4.98 16 13 C -0.50 -14.38 8.51 -34.44 -0.29 -14.67 16 14 H 0.06 1.79 7.11 -52.49 -0.37 1.42 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 17 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.08 1.52 6.20 -51.93 -0.32 1.20 16 24 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 25 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 26 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 27 H 0.08 1.72 6.86 -51.93 -0.36 1.36 16 28 H 0.03 0.68 6.52 -51.93 -0.34 0.35 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 1.10 5.83 -51.93 -0.30 0.80 16 31 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 271.01 15.07 4.08 4.08 Total: -1.00 -32.10 271.01 -6.96 -39.06 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.21 Total: -3.27 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.28 Total: -0.67 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.53 Total: -56.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.10 -6.96 -39.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929809697.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.082 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds