Wall clock time and date at job start Sun Mar 29 2020 22:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47336 * 2 1 4 4 C 1.50705 * 109.46888 * 239.99701 * 2 1 3 5 5 N 1.31794 * 119.12416 * 284.73025 * 4 2 1 6 6 C 1.32333 * 120.81870 * 179.75808 * 5 4 2 7 7 C 1.38595 * 119.10078 * 0.50875 * 6 5 4 8 8 C 1.38600 * 118.40314 * 359.74578 * 7 6 5 9 9 N 1.31789 * 119.12067 * 105.00081 * 4 2 1 10 10 N 1.46906 * 109.46986 * 120.00375 * 2 1 3 11 11 C 1.46906 * 110.99726 * 176.04541 * 10 2 1 12 12 C 1.46902 * 110.99514 * 299.99278 * 10 2 1 13 13 C 1.50706 * 109.46577 * 170.00394 * 12 10 2 14 14 H 1.07995 * 120.00167 * 359.72326 * 13 12 10 15 15 C 1.37879 * 119.99394 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 H 1.08995 * 109.46878 * 59.99609 * 1 2 3 22 22 H 1.08996 * 109.47140 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46757 * 300.00223 * 1 2 3 24 24 H 1.08006 * 120.44868 * 180.27996 * 6 5 4 25 25 H 1.08007 * 120.79722 * 179.77193 * 7 6 5 26 26 H 1.08003 * 120.44860 * 180.02562 * 8 7 6 27 27 H 1.08997 * 109.46955 * 183.94997 * 11 10 2 28 28 H 1.09001 * 109.46689 * 303.94799 * 11 10 2 29 29 H 1.08992 * 109.47393 * 63.94993 * 11 10 2 30 30 H 1.09000 * 109.47263 * 50.00594 * 12 10 2 31 31 H 1.09001 * 109.47582 * 289.99874 * 12 10 2 32 32 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.9701 -2.0260 -1.2819 6 6 2.3972 -2.6837 -2.3478 7 6 2.9243 -1.9711 -3.4132 8 6 2.9778 -0.5892 -3.3201 9 7 2.5270 -0.0002 -2.2242 10 7 2.0197 -0.6926 1.1994 11 6 3.4851 -0.7946 1.1870 12 6 1.5487 -0.0264 2.4211 13 6 1.8581 -0.8912 3.6159 14 1 2.3508 -1.8427 3.4808 15 6 1.5064 -0.4704 4.8809 16 7 0.9006 0.6854 5.0448 17 14 1.8905 -1.5420 6.3620 18 1 3.3570 -1.7572 6.4503 19 1 1.4132 -0.8691 7.5968 20 1 1.2058 -2.8517 6.2163 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 2.3392 -3.7616 -2.3854 25 1 3.2843 -2.4803 -4.2951 26 1 3.3817 -0.0012 -4.1310 27 1 3.8164 -1.3722 2.0499 28 1 3.8069 -1.2917 0.2718 29 1 3.9193 0.2042 1.2300 30 1 0.4723 0.1324 2.3564 31 1 2.0520 0.9345 2.5281 32 1 0.6529 0.9812 5.9348 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929809697.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:14 Heat of formation + Delta-G solvation = 36.866986 kcal Electronic energy + Delta-G solvation = -14896.557364 eV Core-core repulsion = 12470.814016 eV Total energy + Delta-G solvation = -2425.743348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.03075 -38.71238 -34.95274 -34.61509 -33.35652 -31.34295 -29.38234 -26.34072 -25.86274 -25.37294 -23.59037 -21.31445 -18.72144 -18.46293 -17.63919 -16.78113 -16.46523 -16.10439 -15.90526 -15.23510 -15.12699 -14.46513 -14.26539 -14.01373 -13.46117 -13.23654 -12.87939 -12.75373 -12.61174 -12.36463 -12.25410 -11.94276 -11.78079 -11.45877 -11.30582 -10.57320 -10.37222 -10.08413 -9.05039 -8.18019 -6.27302 -0.02827 0.27070 1.42342 1.45920 1.53740 2.41489 2.77790 2.89216 3.10976 3.15791 3.59064 3.82633 4.04728 4.22651 4.27949 4.31838 4.35482 4.53168 4.58370 4.74377 4.86271 4.91508 4.98707 5.18017 5.21007 5.30456 5.51602 5.66345 6.05173 6.14785 6.30518 6.56396 6.86752 7.25774 7.41270 8.93069 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051237 B = 0.006626 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.347460 B = 4224.964464 C = 4448.680922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.142 3.858 3 H 0.043 0.957 4 C 0.319 3.681 5 N -0.518 5.518 6 C 0.128 3.872 7 C -0.215 4.215 8 C 0.132 3.868 9 N -0.547 5.547 10 N -0.524 5.524 11 C 0.055 3.945 12 C 0.205 3.795 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.004 3.996 16 N -0.933 5.933 17 Si 0.970 3.030 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.269 1.269 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.196 0.804 25 H 0.191 0.809 26 H 0.203 0.797 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.005 0.995 30 H 0.024 0.976 31 H -0.039 1.039 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -5.148 -17.260 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.032 3.968 3 H 0.060 0.940 4 C 0.051 3.949 5 N -0.232 5.232 6 C -0.037 4.037 7 C -0.236 4.236 8 C -0.033 4.033 9 N -0.262 5.262 10 N -0.249 5.249 11 C -0.094 4.094 12 C 0.079 3.921 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.194 4.194 16 N -0.574 5.574 17 Si 0.794 3.206 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.194 1.194 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.213 0.787 25 H 0.209 0.791 26 H 0.219 0.781 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.042 0.958 31 H -0.022 1.022 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.386 -5.042 -16.327 17.420 hybrid contribution 0.709 0.277 0.272 0.809 sum 4.095 -4.765 -16.055 17.240 Atomic orbital electron populations 1.21713 0.92162 1.02611 1.01972 1.20259 0.96779 0.93585 0.86204 0.93967 1.22628 0.91516 0.87238 0.93507 1.68313 1.17430 1.09864 1.27587 1.24001 0.89628 1.02639 0.87461 1.23335 1.01684 0.96137 1.02437 1.23918 0.91142 0.93937 0.94265 1.68198 1.12412 1.42880 1.02744 1.62057 1.09864 1.51728 1.01261 1.22025 0.88075 0.98424 1.00862 1.19536 0.95035 0.91157 0.86398 1.21396 1.38493 1.04802 0.91470 0.92157 1.25875 0.94928 0.96561 1.02081 1.70073 1.41849 1.21767 1.23673 0.85437 0.78781 0.78693 0.77692 1.19410 1.20680 1.19374 0.90972 0.92026 0.92270 0.78747 0.79141 0.78077 0.91795 0.93010 0.97618 0.95761 1.02178 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.97 71.98 0.65 -4.17 16 2 C 0.14 5.86 2.48 44.17 0.11 5.96 16 3 H 0.04 1.82 8.12 -2.39 -0.02 1.80 16 4 C 0.32 11.37 5.00 138.75 0.69 12.07 16 5 N -0.52 -17.39 9.65 -187.84 -1.81 -19.20 16 6 C 0.13 2.88 11.30 84.70 0.96 3.84 16 7 C -0.21 -3.52 10.17 22.44 0.23 -3.29 16 8 C 0.13 2.72 11.31 84.70 0.96 3.68 16 9 N -0.55 -17.03 10.32 -187.84 -1.94 -18.97 16 10 N -0.52 -24.82 4.43 -906.00 -4.01 -28.84 16 11 C 0.05 2.41 9.07 127.69 1.16 3.57 16 12 C 0.20 11.35 4.54 85.56 0.39 11.74 16 13 C -0.52 -30.65 8.51 25.60 0.22 -30.43 16 14 H 0.06 3.49 7.11 -2.91 -0.02 3.47 16 15 C 0.00 0.21 5.46 84.66 0.46 0.67 16 16 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 17 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 22 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.06 2.43 6.20 -2.39 -0.01 2.42 16 24 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 25 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 26 H 0.20 2.38 8.06 -2.91 -0.02 2.35 16 27 H 0.06 2.92 6.86 -2.39 -0.02 2.90 16 28 H 0.05 2.07 6.52 -2.39 -0.02 2.06 16 29 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.02 1.41 5.83 -2.39 -0.01 1.40 16 31 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -71.66 271.01 1.47 -70.19 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 1.10 Total: 2.62 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.82 Total: 3.63 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -7.48 Total: -123.68 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.66 1.47 -70.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929809697.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.060 kcal (2) G-P(sol) polarization free energy of solvation -71.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds