Wall clock time and date at job start Sun Mar 29 2020 22:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47516 * 2 1 4 4 C 1.50707 * 109.46654 * 119.99979 * 2 1 3 5 5 N 1.31786 * 119.12679 * 74.72745 * 4 2 1 6 6 C 1.32337 * 120.81914 * 179.75981 * 5 4 2 7 7 C 1.38591 * 119.10258 * 0.50250 * 6 5 4 8 8 C 1.38600 * 118.39985 * 359.75538 * 7 6 5 9 9 N 1.31798 * 119.11535 * 254.99584 * 4 2 1 10 10 N 1.46902 * 109.47407 * 239.99296 * 2 1 3 11 11 C 1.46898 * 111.00283 * 183.95482 * 10 2 1 12 12 C 1.46906 * 110.99573 * 60.00340 * 10 2 1 13 13 C 1.50706 * 109.46929 * 190.00042 * 12 10 2 14 14 H 1.07998 * 119.99628 * 0.02562 * 13 12 10 15 15 C 1.37871 * 119.99847 * 179.97438 * 13 12 10 16 16 N 1.31507 * 120.00190 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 120.00193 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47081 * 89.99276 * 17 15 13 19 19 H 1.48499 * 109.47356 * 209.99897 * 17 15 13 20 20 H 1.48503 * 109.46728 * 329.99994 * 17 15 13 21 21 H 1.09003 * 109.47841 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47719 * 300.00655 * 1 2 3 23 23 H 1.09001 * 109.46892 * 60.00647 * 1 2 3 24 24 H 1.08005 * 120.44821 * 180.27895 * 6 5 4 25 25 H 1.08001 * 120.79888 * 179.77571 * 7 6 5 26 26 H 1.08008 * 120.44525 * 179.97438 * 8 7 6 27 27 H 1.08997 * 109.47334 * 296.05250 * 11 10 2 28 28 H 1.09000 * 109.46674 * 56.05127 * 11 10 2 29 29 H 1.08995 * 109.47296 * 176.04950 * 11 10 2 30 30 H 1.08998 * 109.47121 * 309.99709 * 12 10 2 31 31 H 1.09000 * 109.47141 * 69.99907 * 12 10 2 32 32 H 0.96996 * 120.00773 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0322 -0.7105 1.2306 5 7 1.9601 -2.0251 1.2866 6 6 2.3955 -2.6834 2.3488 7 6 2.9225 -1.9707 3.4142 8 6 2.9769 -0.5890 3.3205 9 7 2.5270 0.0001 2.2242 10 7 2.0197 -0.6926 -1.1993 11 6 3.4851 -0.7947 -1.1869 12 6 1.5487 -0.0265 -2.4211 13 6 1.8580 -0.8914 -3.6159 14 1 2.3544 -1.8410 -3.4810 15 6 1.5064 -0.4708 -4.8809 16 7 1.7767 -1.2252 -5.9236 17 14 0.6472 1.1715 -5.1140 18 1 1.6620 2.2375 -5.3112 19 1 -0.2369 1.1030 -6.3052 20 1 -0.1667 1.4795 -3.9106 21 1 -0.3635 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 2.3376 -3.7613 2.3865 25 1 3.2825 -2.4798 4.2960 26 1 3.3808 -0.0009 4.1314 27 1 3.9192 0.2042 -1.2299 28 1 3.8068 -1.2917 -0.2717 29 1 3.8164 -1.3723 -2.0498 30 1 0.4723 0.1322 -2.3564 31 1 2.0519 0.9344 -2.5280 32 1 1.5297 -0.9292 -6.8136 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929809698.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:17 Heat of formation + Delta-G solvation = 64.536683 kcal Electronic energy + Delta-G solvation = -14941.572651 eV Core-core repulsion = 12517.029152 eV Total energy + Delta-G solvation = -2424.543499 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97754 -37.19468 -33.57621 -33.00281 -31.89492 -30.04900 -28.00469 -24.64301 -24.44623 -24.33763 -21.70554 -19.67735 -17.39139 -17.16950 -16.47692 -15.31324 -15.15311 -14.50687 -14.45298 -13.76547 -13.59738 -13.42389 -12.81932 -12.41453 -11.87501 -11.79053 -11.23805 -11.13813 -10.94005 -10.69906 -10.67805 -10.60541 -10.06434 -9.82817 -9.43812 -9.18432 -9.04208 -8.53012 -7.33967 -6.00909 -3.97638 0.96236 1.19948 3.31224 3.38779 3.40343 3.85778 3.98882 4.24280 4.45428 4.61294 4.89314 4.99061 5.13596 5.29878 5.35381 5.62653 5.69312 5.82094 5.94646 6.11489 6.24283 6.29401 6.43610 6.63491 6.71535 6.87507 6.99538 7.12451 7.62471 7.91042 8.02373 8.31448 8.69778 9.08738 9.60527 11.12310 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051573 B = 0.007039 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.787621 B = 3976.637918 C = 4197.603044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.142 3.858 3 H 0.057 0.943 4 C 0.339 3.661 5 N -0.479 5.479 6 C 0.144 3.856 7 C -0.243 4.243 8 C 0.142 3.858 9 N -0.523 5.523 10 N -0.509 5.509 11 C 0.043 3.957 12 C 0.158 3.842 13 C -0.505 4.505 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.873 3.127 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.266 1.266 21 H 0.071 0.929 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.166 0.834 25 H 0.143 0.857 26 H 0.164 0.836 27 H 0.011 0.989 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.037 0.963 31 H -0.016 1.016 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 1.029 17.953 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.032 3.968 3 H 0.074 0.926 4 C 0.072 3.928 5 N -0.192 5.192 6 C -0.023 4.023 7 C -0.265 4.265 8 C -0.025 4.025 9 N -0.238 5.238 10 N -0.234 5.234 11 C -0.106 4.106 12 C 0.033 3.967 13 C -0.543 4.543 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.701 3.299 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.191 1.191 21 H 0.090 0.910 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.183 0.817 25 H 0.160 0.840 26 H 0.181 0.819 27 H 0.030 0.970 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.002 0.998 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.440 1.019 16.934 16.970 hybrid contribution 0.368 1.145 0.665 1.374 sum 0.808 2.164 17.599 17.750 Atomic orbital electron populations 1.21842 0.92764 1.03403 1.01656 1.20336 0.96134 0.94150 0.86208 0.92554 1.23240 0.89230 0.86828 0.93520 1.68429 1.15837 1.09947 1.25000 1.23378 0.89911 1.01167 0.87881 1.22865 1.04782 0.96843 1.02042 1.23150 0.92034 0.92495 0.94777 1.68262 1.11736 1.42047 1.01719 1.61990 1.09685 1.51208 1.00556 1.22189 0.88086 0.99010 1.01304 1.20330 0.95938 0.92840 0.87626 1.21010 1.38642 1.06060 0.88625 0.90051 1.24878 0.95634 0.96905 0.95895 1.69886 1.47935 1.37571 0.98635 0.86888 0.80185 0.84827 0.78015 1.20380 1.21154 1.19097 0.90966 0.93117 0.90801 0.81720 0.83957 0.81931 0.97003 0.94423 0.89887 0.94471 0.99819 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.97 37.15 0.33 -2.06 16 2 C 0.14 2.70 2.47 -68.86 -0.17 2.53 16 3 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 4 C 0.34 5.90 4.98 -157.20 -0.78 5.11 16 5 N -0.48 -8.11 9.69 -10.72 -0.10 -8.22 16 6 C 0.14 1.79 11.30 -17.20 -0.19 1.60 16 7 C -0.24 -2.46 10.17 -39.32 -0.40 -2.86 16 8 C 0.14 1.64 11.30 -17.20 -0.19 1.44 16 9 N -0.52 -8.16 10.32 -10.72 -0.11 -8.27 16 10 N -0.51 -11.29 4.43 -237.73 -1.05 -12.35 16 11 C 0.04 0.90 9.07 60.06 0.54 1.44 16 12 C 0.16 3.91 3.60 -4.97 -0.02 3.90 16 13 C -0.51 -14.55 9.07 -34.44 -0.31 -14.86 16 14 H 0.08 2.56 7.35 -52.49 -0.39 2.18 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 17 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 21 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 1.30 6.20 -51.93 -0.32 0.98 16 24 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16 25 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 26 H 0.16 1.27 8.06 -52.48 -0.42 0.84 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.04 0.74 6.54 -51.93 -0.34 0.40 16 29 H 0.08 1.88 6.86 -51.93 -0.36 1.53 16 30 H 0.04 0.91 4.88 -51.93 -0.25 0.66 16 31 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 267.45 15.07 4.03 4.03 Total: -1.00 -32.76 267.45 -6.60 -39.36 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -4.17 Total: -2.57 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.29 Total: -1.86 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.49 Total: -55.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.76 -6.60 -39.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929809698.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.900 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds