Wall clock time and date at job start Sun Mar 29 2020 22:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47516 * 2 1 4 4 C 1.50707 * 109.46654 * 119.99979 * 2 1 3 5 5 N 1.31786 * 119.12679 * 74.72745 * 4 2 1 6 6 C 1.32337 * 120.81914 * 179.75981 * 5 4 2 7 7 C 1.38591 * 119.10258 * 0.50250 * 6 5 4 8 8 C 1.38600 * 118.39985 * 359.75538 * 7 6 5 9 9 N 1.31798 * 119.11535 * 254.99584 * 4 2 1 10 10 N 1.46902 * 109.47407 * 239.99296 * 2 1 3 11 11 C 1.46898 * 111.00283 * 183.95482 * 10 2 1 12 12 C 1.46906 * 110.99573 * 60.00340 * 10 2 1 13 13 C 1.50706 * 109.46929 * 190.00042 * 12 10 2 14 14 H 1.07998 * 119.99628 * 0.02562 * 13 12 10 15 15 C 1.37871 * 119.99847 * 179.97438 * 13 12 10 16 16 N 1.31507 * 120.00190 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 120.00193 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47081 * 89.99276 * 17 15 13 19 19 H 1.48499 * 109.47356 * 209.99897 * 17 15 13 20 20 H 1.48503 * 109.46728 * 329.99994 * 17 15 13 21 21 H 1.09003 * 109.47841 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47719 * 300.00655 * 1 2 3 23 23 H 1.09001 * 109.46892 * 60.00647 * 1 2 3 24 24 H 1.08005 * 120.44821 * 180.27895 * 6 5 4 25 25 H 1.08001 * 120.79888 * 179.77571 * 7 6 5 26 26 H 1.08008 * 120.44525 * 179.97438 * 8 7 6 27 27 H 1.08997 * 109.47334 * 296.05250 * 11 10 2 28 28 H 1.09000 * 109.46674 * 56.05127 * 11 10 2 29 29 H 1.08995 * 109.47296 * 176.04950 * 11 10 2 30 30 H 1.08998 * 109.47121 * 309.99709 * 12 10 2 31 31 H 1.09000 * 109.47141 * 69.99907 * 12 10 2 32 32 H 0.96996 * 120.00773 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0322 -0.7105 1.2306 5 7 1.9601 -2.0251 1.2866 6 6 2.3955 -2.6834 2.3488 7 6 2.9225 -1.9707 3.4142 8 6 2.9769 -0.5890 3.3205 9 7 2.5270 0.0001 2.2242 10 7 2.0197 -0.6926 -1.1993 11 6 3.4851 -0.7947 -1.1869 12 6 1.5487 -0.0265 -2.4211 13 6 1.8580 -0.8914 -3.6159 14 1 2.3544 -1.8410 -3.4810 15 6 1.5064 -0.4708 -4.8809 16 7 1.7767 -1.2252 -5.9236 17 14 0.6472 1.1715 -5.1140 18 1 1.6620 2.2375 -5.3112 19 1 -0.2369 1.1030 -6.3052 20 1 -0.1667 1.4795 -3.9106 21 1 -0.3635 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 2.3376 -3.7613 2.3865 25 1 3.2825 -2.4798 4.2960 26 1 3.3808 -0.0009 4.1314 27 1 3.9192 0.2042 -1.2299 28 1 3.8068 -1.2917 -0.2717 29 1 3.8164 -1.3723 -2.0498 30 1 0.4723 0.1322 -2.3564 31 1 2.0519 0.9344 -2.5280 32 1 1.5297 -0.9292 -6.8136 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929809698.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:17 Heat of formation + Delta-G solvation = 39.947149 kcal Electronic energy + Delta-G solvation = -14942.638933 eV Core-core repulsion = 12517.029152 eV Total energy + Delta-G solvation = -2425.609782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.03611 -38.79572 -34.90897 -34.61644 -33.45801 -31.35481 -29.98734 -26.24326 -25.85804 -25.37304 -23.32922 -21.28073 -19.11279 -18.48994 -17.72929 -16.68002 -16.51984 -16.04174 -15.96421 -15.39901 -14.99733 -14.52437 -14.39903 -14.26332 -13.58621 -13.23650 -12.99576 -12.76895 -12.59064 -12.36407 -12.14765 -11.79570 -11.75381 -11.49395 -11.42431 -10.76266 -10.38503 -10.08765 -9.07294 -8.26059 -6.29296 -0.03260 0.26148 1.36488 1.38227 1.49298 2.36507 2.73005 2.88815 3.04745 3.10898 3.55421 3.82048 4.03105 4.20959 4.26616 4.29855 4.32073 4.51335 4.54510 4.72913 4.77877 4.89350 4.95023 5.00572 5.09587 5.20905 5.50892 5.56247 5.95193 6.15631 6.27852 6.61528 6.75893 7.24914 7.33473 8.90728 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051573 B = 0.007039 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.787621 B = 3976.637918 C = 4197.603044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.141 3.859 3 H 0.055 0.945 4 C 0.316 3.684 5 N -0.520 5.520 6 C 0.127 3.873 7 C -0.215 4.215 8 C 0.133 3.867 9 N -0.543 5.543 10 N -0.525 5.525 11 C 0.055 3.945 12 C 0.169 3.831 13 C -0.514 4.514 14 H 0.035 0.965 15 C 0.009 3.991 16 N -0.949 5.949 17 Si 0.945 3.055 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.244 1.244 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.192 0.808 25 H 0.190 0.810 26 H 0.203 0.797 27 H 0.016 0.984 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.045 0.955 31 H -0.014 1.014 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 2.187 20.693 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.031 3.969 3 H 0.073 0.927 4 C 0.048 3.952 5 N -0.234 5.234 6 C -0.038 4.038 7 C -0.236 4.236 8 C -0.032 4.032 9 N -0.258 5.258 10 N -0.250 5.250 11 C -0.093 4.093 12 C 0.043 3.957 13 C -0.553 4.553 14 H 0.054 0.946 15 C -0.188 4.188 16 N -0.589 5.589 17 Si 0.768 3.232 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.168 1.168 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.209 0.791 25 H 0.207 0.793 26 H 0.220 0.780 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.004 0.996 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.187 2.163 19.717 19.836 hybrid contribution 0.547 0.638 -0.027 0.841 sum 0.734 2.801 19.690 19.902 Atomic orbital electron populations 1.21775 0.91876 1.02807 1.02466 1.20332 0.96964 0.93953 0.85691 0.92729 1.22704 0.91582 0.87187 0.93706 1.68316 1.17501 1.10094 1.27494 1.23961 0.89713 1.02572 0.87602 1.23324 1.01704 0.96271 1.02320 1.23917 0.91062 0.93809 0.94374 1.68206 1.12354 1.42646 1.02613 1.61837 1.10059 1.51982 1.01073 1.22003 0.87921 0.98826 1.00586 1.20086 0.96332 0.91968 0.87359 1.21206 1.38202 1.05046 0.90798 0.94620 1.25826 0.96397 1.01323 0.95296 1.70044 1.49499 1.40047 0.99352 0.85745 0.79296 0.79312 0.78828 1.19377 1.20551 1.16778 0.92197 0.90668 0.91475 0.79084 0.79277 0.77990 0.96546 0.93068 0.92773 0.93707 0.99599 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 8.97 71.98 0.65 -3.78 16 2 C 0.14 5.28 2.47 44.17 0.11 5.39 16 3 H 0.05 2.04 8.12 -2.39 -0.02 2.02 16 4 C 0.32 10.68 4.98 138.75 0.69 11.37 16 5 N -0.52 -17.14 9.69 -187.84 -1.82 -18.96 16 6 C 0.13 2.85 11.30 84.70 0.96 3.80 16 7 C -0.21 -3.43 10.17 22.44 0.23 -3.20 16 8 C 0.13 2.59 11.30 84.70 0.96 3.54 16 9 N -0.54 -15.80 10.32 -187.83 -1.94 -17.74 16 10 N -0.52 -23.62 4.43 -906.04 -4.02 -27.63 16 11 C 0.06 2.39 9.07 127.69 1.16 3.54 16 12 C 0.17 8.41 3.60 85.56 0.31 8.72 16 13 C -0.51 -30.67 9.07 25.60 0.23 -30.43 16 14 H 0.04 2.39 7.35 -2.91 -0.02 2.37 16 15 C 0.01 0.52 5.47 84.65 0.46 0.98 16 16 N -0.95 -60.36 13.96 21.44 0.30 -60.06 16 17 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.24 -10.57 6.54 99.48 0.65 -9.91 16 21 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 22 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.07 2.30 6.20 -2.39 -0.01 2.29 16 24 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 25 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 26 H 0.20 2.14 8.06 -2.91 -0.02 2.11 16 27 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 2.04 6.54 -2.39 -0.02 2.02 16 29 H 0.05 2.60 6.86 -2.39 -0.02 2.58 16 30 H 0.05 2.16 4.88 -2.39 -0.01 2.15 16 31 H -0.01 -0.67 7.55 -2.39 -0.02 -0.68 16 32 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -73.94 267.45 1.21 -72.73 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 1.05 Total: 5.35 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.75 Total: -0.06 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -7.48 Total: -124.40 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -73.94 1.21 -72.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929809698.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.679 kcal (2) G-P(sol) polarization free energy of solvation -73.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds