Wall clock time and date at job start Sun Mar 29 2020 22:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47154 * 2 1 4 4 N 1.46898 * 109.46991 * 119.99936 * 2 1 3 5 5 C 1.46902 * 110.99876 * 204.08241 * 4 2 1 6 6 H 1.08997 * 109.47284 * 327.82363 * 5 4 2 7 7 C 1.52999 * 109.46837 * 87.82901 * 5 4 2 8 8 C 1.50706 * 109.47249 * 207.82333 * 5 4 2 9 9 H 1.08001 * 119.99850 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00340 * 180.02562 * 8 5 4 11 11 N 1.31512 * 120.00486 * 180.02562 * 10 8 5 12 12 Si 1.86802 * 119.99657 * 0.02562 * 10 8 5 13 13 H 1.48501 * 109.47297 * 89.99956 * 12 10 8 14 14 H 1.48503 * 109.47083 * 209.99862 * 12 10 8 15 15 H 1.48501 * 109.47289 * 330.00114 * 12 10 8 16 16 C 1.50707 * 109.46909 * 239.99749 * 2 1 3 17 17 N 1.31795 * 119.12031 * 284.72770 * 16 2 1 18 18 C 1.32341 * 120.81269 * 179.76187 * 17 16 2 19 19 C 1.38597 * 119.10371 * 0.50416 * 18 17 16 20 20 C 1.38597 * 118.40278 * 359.75505 * 19 18 17 21 21 N 1.31797 * 119.11876 * 105.00413 * 16 2 1 22 22 H 1.09000 * 109.47382 * 298.69132 * 1 2 3 23 23 H 1.08998 * 109.47145 * 58.69362 * 1 2 3 24 24 H 1.08999 * 109.47469 * 178.69229 * 1 2 3 25 25 H 1.00903 * 111.00088 * 80.13286 * 4 2 1 26 26 H 1.09002 * 109.47044 * 306.10269 * 7 5 4 27 27 H 1.08996 * 109.47674 * 66.10276 * 7 5 4 28 28 H 1.09000 * 109.47261 * 186.10410 * 7 5 4 29 29 H 0.97000 * 119.99809 * 179.97438 * 11 10 8 30 30 H 1.07997 * 120.44655 * 180.28068 * 18 17 16 31 31 H 1.07993 * 120.79928 * 179.76977 * 19 18 17 32 32 H 1.07995 * 120.45133 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3756 -0.2473 1.5476 6 1 3.9191 0.0077 0.6379 7 6 3.2915 0.9828 2.4535 8 6 4.0978 -1.3550 2.2706 9 1 3.5996 -2.2957 2.4527 10 6 5.3947 -1.1675 2.6994 11 7 6.0252 -2.1342 3.3298 12 14 6.2562 0.4599 2.3850 13 1 6.0095 1.3791 3.5250 14 1 7.7162 0.2278 2.2433 15 1 5.7280 1.0666 1.1367 16 6 2.0323 -0.7105 -1.2305 17 7 1.9701 -2.0260 -1.2818 18 6 2.3973 -2.6837 -2.3478 19 6 2.9243 -1.9711 -3.4133 20 6 2.9779 -0.5893 -3.3201 21 7 2.5271 -0.0001 -2.2242 22 1 -0.3634 0.4934 0.9015 23 1 -0.3633 0.5340 -0.8780 24 1 -0.3634 -1.0274 -0.0235 25 1 1.9879 -1.6936 1.0773 26 1 2.6768 1.7452 1.9748 27 1 2.8448 0.7020 3.4072 28 1 4.2931 1.3778 2.6237 29 1 6.9377 -2.0023 3.6312 30 1 2.3394 -3.7615 -2.3854 31 1 3.2844 -2.4802 -4.2950 32 1 3.3817 -0.0013 -4.1309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930867085.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:11 Heat of formation + Delta-G solvation = 53.932134 kcal Electronic energy + Delta-G solvation = -15101.668555 eV Core-core repulsion = 12676.665208 eV Total energy + Delta-G solvation = -2425.003347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85844 -36.68426 -33.51428 -33.45527 -31.61505 -30.37090 -27.67174 -25.03066 -24.53267 -24.19383 -21.08932 -19.85028 -17.39855 -17.10683 -16.46493 -15.45087 -15.03539 -14.73887 -14.00812 -13.90960 -13.36286 -13.13108 -12.84129 -12.37960 -12.00850 -11.87927 -11.23424 -11.12191 -10.70282 -10.64508 -10.60935 -10.48229 -10.09571 -9.52278 -9.29996 -9.05791 -8.98522 -8.59894 -7.62788 -6.08310 -4.07557 1.07001 1.27942 3.28238 3.37501 3.40203 3.96405 4.13730 4.32114 4.40303 4.71073 5.06520 5.11401 5.23291 5.26213 5.42869 5.72732 5.74520 5.87456 6.07520 6.29199 6.43477 6.44883 6.56455 6.59228 6.76622 6.85067 7.19394 7.42208 7.58828 7.90492 8.32615 8.39457 8.62855 8.97050 9.54129 11.04666 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.009704 C = 0.008744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.769893 B = 2884.820808 C = 3201.461065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.147 3.853 3 H 0.095 0.905 4 N -0.659 5.659 5 C 0.179 3.821 6 H -0.001 1.001 7 C -0.137 4.137 8 C -0.517 4.517 9 H 0.079 0.921 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.888 3.112 13 H -0.276 1.276 14 H -0.298 1.298 15 H -0.269 1.269 16 C 0.305 3.695 17 N -0.506 5.506 18 C 0.152 3.848 19 C -0.243 4.243 20 C 0.143 3.857 21 N -0.519 5.519 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.355 0.645 26 H 0.029 0.971 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.166 0.834 31 H 0.143 0.857 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 2.574 -12.778 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.033 3.967 3 H 0.113 0.887 4 N -0.291 5.291 5 C 0.070 3.930 6 H 0.016 0.984 7 C -0.195 4.195 8 C -0.555 4.555 9 H 0.097 0.903 10 C -0.130 4.130 11 N -0.536 5.536 12 Si 0.718 3.282 13 H -0.203 1.203 14 H -0.226 1.226 15 H -0.195 1.195 16 C 0.035 3.965 17 N -0.219 5.219 18 C -0.015 4.015 19 C -0.265 4.265 20 C -0.023 4.023 21 N -0.233 5.233 22 H 0.091 0.909 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.176 0.824 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.183 0.817 31 H 0.161 0.839 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.946 3.409 -11.399 14.308 hybrid contribution 1.694 -0.147 -1.724 2.422 sum -6.252 3.262 -13.124 14.898 Atomic orbital electron populations 1.21706 0.93193 1.02294 1.01591 1.20652 0.95661 0.97604 0.82773 0.88679 1.60818 1.26502 1.12029 1.29744 1.19573 0.85033 0.94435 0.93930 0.98387 1.22077 0.98570 0.97632 1.01232 1.21111 0.97840 0.99824 1.36769 0.90297 1.24907 0.97122 0.96497 0.94477 1.69893 1.12383 1.32449 1.38923 0.86846 0.77674 0.84395 0.79240 1.20306 1.22580 1.19464 1.24663 0.89591 0.87309 0.94888 1.68104 1.17600 1.10166 1.26043 1.23221 0.89596 1.00943 0.87720 1.22824 1.04710 0.96832 1.02116 1.23202 0.91674 0.92544 0.94886 1.68358 1.11450 1.41975 1.01508 0.90868 0.93236 0.92237 0.82375 0.95146 0.92159 0.94730 0.92639 0.81680 0.83912 0.81982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.50 37.16 0.35 -1.58 16 2 C 0.15 2.70 2.82 -68.86 -0.19 2.51 16 3 H 0.10 1.80 7.29 -51.93 -0.38 1.42 16 4 N -0.66 -14.19 6.05 -102.17 -0.62 -14.81 16 5 C 0.18 4.45 1.99 -68.86 -0.14 4.31 16 6 H 0.00 -0.04 6.64 -51.93 -0.34 -0.38 16 7 C -0.14 -3.17 8.84 37.16 0.33 -2.84 16 8 C -0.52 -14.93 9.17 -34.44 -0.32 -15.25 16 9 H 0.08 2.46 7.82 -52.49 -0.41 2.05 16 10 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 11 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 12 Si 0.89 22.80 24.31 -169.99 -4.13 18.67 16 13 H -0.28 -6.87 6.93 56.52 0.39 -6.48 16 14 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 15 H -0.27 -6.80 6.53 56.52 0.37 -6.43 16 16 C 0.30 5.62 6.22 -157.19 -0.98 4.64 16 17 N -0.51 -8.98 9.34 -10.72 -0.10 -9.08 16 18 C 0.15 2.14 11.31 -17.20 -0.19 1.94 16 19 C -0.24 -2.93 10.17 -39.32 -0.40 -3.33 16 20 C 0.14 1.95 11.31 -17.20 -0.19 1.75 16 21 N -0.52 -9.01 10.32 -10.72 -0.11 -9.12 16 22 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.36 7.98 7.12 -39.29 -0.28 7.70 16 26 H 0.03 0.61 7.58 -51.93 -0.39 0.21 16 27 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 28 H 0.03 0.82 3.45 -51.93 -0.18 0.64 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 266.25 15.07 4.01 4.01 Total: -1.00 -32.75 266.25 -6.13 -38.88 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.12 Total: 4.38 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.83 Total: -5.81 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.06 Total: -60.14 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.13 Total: 18.67 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.75 -6.13 -38.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867085.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.814 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds