Wall clock time and date at job start Sun Mar 29 2020 22:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47154 * 2 1 4 4 N 1.46898 * 109.46991 * 119.99936 * 2 1 3 5 5 C 1.46902 * 110.99876 * 204.08241 * 4 2 1 6 6 H 1.08997 * 109.47284 * 327.82363 * 5 4 2 7 7 C 1.52999 * 109.46837 * 87.82901 * 5 4 2 8 8 C 1.50706 * 109.47249 * 207.82333 * 5 4 2 9 9 H 1.08001 * 119.99850 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00340 * 180.02562 * 8 5 4 11 11 N 1.31512 * 120.00486 * 180.02562 * 10 8 5 12 12 Si 1.86802 * 119.99657 * 0.02562 * 10 8 5 13 13 H 1.48501 * 109.47297 * 89.99956 * 12 10 8 14 14 H 1.48503 * 109.47083 * 209.99862 * 12 10 8 15 15 H 1.48501 * 109.47289 * 330.00114 * 12 10 8 16 16 C 1.50707 * 109.46909 * 239.99749 * 2 1 3 17 17 N 1.31795 * 119.12031 * 284.72770 * 16 2 1 18 18 C 1.32341 * 120.81269 * 179.76187 * 17 16 2 19 19 C 1.38597 * 119.10371 * 0.50416 * 18 17 16 20 20 C 1.38597 * 118.40278 * 359.75505 * 19 18 17 21 21 N 1.31797 * 119.11876 * 105.00413 * 16 2 1 22 22 H 1.09000 * 109.47382 * 298.69132 * 1 2 3 23 23 H 1.08998 * 109.47145 * 58.69362 * 1 2 3 24 24 H 1.08999 * 109.47469 * 178.69229 * 1 2 3 25 25 H 1.00903 * 111.00088 * 80.13286 * 4 2 1 26 26 H 1.09002 * 109.47044 * 306.10269 * 7 5 4 27 27 H 1.08996 * 109.47674 * 66.10276 * 7 5 4 28 28 H 1.09000 * 109.47261 * 186.10410 * 7 5 4 29 29 H 0.97000 * 119.99809 * 179.97438 * 11 10 8 30 30 H 1.07997 * 120.44655 * 180.28068 * 18 17 16 31 31 H 1.07993 * 120.79928 * 179.76977 * 19 18 17 32 32 H 1.07995 * 120.45133 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3756 -0.2473 1.5476 6 1 3.9191 0.0077 0.6379 7 6 3.2915 0.9828 2.4535 8 6 4.0978 -1.3550 2.2706 9 1 3.5996 -2.2957 2.4527 10 6 5.3947 -1.1675 2.6994 11 7 6.0252 -2.1342 3.3298 12 14 6.2562 0.4599 2.3850 13 1 6.0095 1.3791 3.5250 14 1 7.7162 0.2278 2.2433 15 1 5.7280 1.0666 1.1367 16 6 2.0323 -0.7105 -1.2305 17 7 1.9701 -2.0260 -1.2818 18 6 2.3973 -2.6837 -2.3478 19 6 2.9243 -1.9711 -3.4133 20 6 2.9779 -0.5893 -3.3201 21 7 2.5271 -0.0001 -2.2242 22 1 -0.3634 0.4934 0.9015 23 1 -0.3633 0.5340 -0.8780 24 1 -0.3634 -1.0274 -0.0235 25 1 1.9879 -1.6936 1.0773 26 1 2.6768 1.7452 1.9748 27 1 2.8448 0.7020 3.4072 28 1 4.2931 1.3778 2.6237 29 1 6.9377 -2.0023 3.6312 30 1 2.3394 -3.7615 -2.3854 31 1 3.2844 -2.4802 -4.2950 32 1 3.3817 -0.0013 -4.1309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930867085.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:11 Heat of formation + Delta-G solvation = 28.937240 kcal Electronic energy + Delta-G solvation = -15102.752415 eV Core-core repulsion = 12676.665208 eV Total energy + Delta-G solvation = -2426.087207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.02306 -38.32222 -35.30219 -34.65888 -33.45494 -31.73020 -29.27656 -27.14437 -25.72091 -25.34867 -22.60716 -21.62415 -19.05104 -18.51765 -17.97586 -17.12881 -16.32943 -16.04399 -15.65631 -15.32655 -15.06762 -14.47585 -14.31509 -14.23161 -13.79834 -13.28232 -12.90916 -12.82321 -12.46586 -12.16092 -12.10067 -11.84279 -11.73466 -11.48237 -11.13094 -10.82390 -10.43937 -10.20199 -9.35762 -8.36115 -6.40096 -0.04867 0.19348 1.24946 1.29003 1.39300 2.25403 2.80448 2.93842 2.98567 3.16280 3.61095 3.76882 4.09237 4.22364 4.29632 4.40359 4.49844 4.53638 4.65777 4.78605 4.84828 4.92978 4.99293 5.06217 5.29027 5.44812 5.49574 5.58821 5.93607 6.09898 6.44308 6.55212 6.75995 7.16374 7.25820 8.80395 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.009704 C = 0.008744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.769893 B = 2884.820808 C = 3201.461065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.144 3.856 3 H 0.089 0.911 4 N -0.658 5.658 5 C 0.189 3.811 6 H -0.019 1.019 7 C -0.134 4.134 8 C -0.522 4.522 9 H 0.039 0.961 10 C 0.018 3.982 11 N -0.942 5.942 12 Si 0.949 3.051 13 H -0.259 1.259 14 H -0.295 1.295 15 H -0.262 1.262 16 C 0.278 3.722 17 N -0.538 5.538 18 C 0.131 3.869 19 C -0.221 4.221 20 C 0.130 3.870 21 N -0.543 5.543 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.346 0.654 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.267 0.733 30 H 0.194 0.806 31 H 0.189 0.811 32 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.553 3.856 -14.752 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.031 3.969 3 H 0.107 0.893 4 N -0.289 5.289 5 C 0.079 3.921 6 H -0.002 1.002 7 C -0.191 4.191 8 C -0.561 4.561 9 H 0.057 0.943 10 C -0.180 4.180 11 N -0.582 5.582 12 Si 0.777 3.223 13 H -0.184 1.184 14 H -0.223 1.223 15 H -0.187 1.187 16 C 0.009 3.991 17 N -0.252 5.252 18 C -0.034 4.034 19 C -0.242 4.242 20 C -0.035 4.035 21 N -0.258 5.258 22 H 0.099 0.901 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.166 0.834 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.211 0.789 31 H 0.207 0.793 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.036 4.696 -13.393 16.309 hybrid contribution 1.681 -0.680 -1.237 2.195 sum -6.354 4.017 -14.630 16.448 Atomic orbital electron populations 1.21617 0.90790 1.02408 1.02800 1.20686 0.97467 0.96700 0.82054 0.89300 1.60812 1.24264 1.11579 1.32253 1.19356 0.86143 0.93755 0.92861 1.00170 1.21982 0.98915 0.97426 1.00799 1.21358 0.98254 0.99723 1.36725 0.94251 1.25731 0.97900 1.00134 0.94262 1.70027 1.12997 1.34745 1.40469 0.85846 0.76388 0.80220 0.79882 1.18438 1.22266 1.18671 1.24406 0.91430 0.87777 0.95507 1.68047 1.18979 1.10207 1.28010 1.23878 0.89480 1.02505 0.87552 1.23298 1.02040 0.96305 1.02593 1.23953 0.90972 0.93907 0.94667 1.68312 1.12252 1.42720 1.02548 0.90107 0.91431 0.92668 0.83438 0.92091 0.92551 0.95133 0.92366 0.78888 0.79343 0.78212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.41 9.50 71.98 0.68 -2.72 16 2 C 0.14 5.24 2.82 44.17 0.12 5.36 16 3 H 0.09 3.29 7.29 -2.39 -0.02 3.27 16 4 N -0.66 -28.62 6.05 -477.14 -2.89 -31.51 16 5 C 0.19 9.38 1.99 44.17 0.09 9.47 16 6 H -0.02 -1.02 6.64 -2.39 -0.02 -1.04 16 7 C -0.13 -5.97 8.84 71.98 0.64 -5.34 16 8 C -0.52 -30.96 9.17 25.60 0.23 -30.72 16 9 H 0.04 2.58 7.82 -2.91 -0.02 2.55 16 10 C 0.02 1.07 5.45 84.65 0.46 1.53 16 11 N -0.94 -59.82 13.96 21.44 0.30 -59.52 16 12 Si 0.95 46.81 24.31 68.60 1.67 48.48 16 13 H -0.26 -11.98 6.93 99.48 0.69 -11.29 16 14 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 15 H -0.26 -12.51 6.53 99.48 0.65 -11.86 16 16 C 0.28 10.13 6.22 138.75 0.86 10.99 16 17 N -0.54 -18.96 9.34 -187.83 -1.75 -20.72 16 18 C 0.13 3.46 11.31 84.70 0.96 4.42 16 19 C -0.22 -4.60 10.17 22.44 0.23 -4.38 16 20 C 0.13 3.17 11.31 84.70 0.96 4.13 16 21 N -0.54 -18.12 10.32 -187.84 -1.94 -20.06 16 22 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.35 16.08 7.12 -89.69 -0.64 15.44 16 26 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 27 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.03 1.37 3.45 -2.39 -0.01 1.37 16 29 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 30 H 0.19 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.19 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.20 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -72.59 266.25 1.03 -71.56 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.41 Total: 19.03 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.23 Total: -7.26 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -6.28 Total: -131.81 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.67 Total: 48.48 kcal Total: -72.59 1.03 -71.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867085.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.502 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds