Wall clock time and date at job start Sun Mar 29 2020 22:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46957 * 2 1 4 4 C 1.50702 * 109.46890 * 119.99603 * 2 1 3 5 5 H 1.08004 * 119.99961 * 120.00168 * 4 2 1 6 6 C 1.37882 * 120.00174 * 299.99878 * 4 2 1 7 7 N 1.31513 * 119.99593 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 119.99949 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47756 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47127 * 120.00186 * 8 6 4 11 11 H 1.48506 * 109.47043 * 239.99984 * 8 6 4 12 12 N 1.46894 * 109.47278 * 239.99358 * 2 1 3 13 13 C 1.46903 * 110.99765 * 85.00091 * 12 2 1 14 14 H 1.08999 * 109.47520 * 325.00206 * 13 12 2 15 15 C 1.53006 * 109.47057 * 85.00179 * 13 12 2 16 16 C 1.50702 * 109.47264 * 205.00150 * 13 12 2 17 17 N 1.31795 * 119.12069 * 314.72936 * 16 13 12 18 18 C 1.32334 * 120.81807 * 180.27980 * 17 16 13 19 19 C 1.38590 * 119.10653 * 359.97438 * 18 17 16 20 20 C 1.38602 * 118.39861 * 0.02562 * 19 18 17 21 21 N 1.31794 * 119.12500 * 135.00320 * 16 13 12 22 22 H 1.08997 * 109.47216 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46931 * 300.00576 * 1 2 3 24 24 H 1.09001 * 109.46869 * 60.00175 * 1 2 3 25 25 H 0.97002 * 119.99570 * 180.02562 * 7 6 4 26 26 H 1.00898 * 111.00148 * 208.95238 * 12 2 1 27 27 H 1.09001 * 109.47069 * 300.00021 * 15 13 12 28 28 H 1.08999 * 109.46933 * 59.99668 * 15 13 12 29 29 H 1.08998 * 109.46891 * 179.97438 * 15 13 12 30 30 H 1.07998 * 120.44696 * 180.02562 * 18 17 16 31 31 H 1.07998 * 120.80773 * 180.02562 * 19 18 17 32 32 H 1.08004 * 120.44687 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 3.1483 -2.2854 3.6041 10 1 3.1472 -0.1854 4.8161 11 1 1.1676 -1.5863 4.8166 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 1 1.2577 0.9328 -2.2907 15 6 3.4112 0.9807 -2.3223 16 6 1.9786 -0.5679 -3.6258 17 7 2.6920 -1.6679 -3.7597 18 6 2.6308 -2.3846 -4.8705 19 6 1.8026 -1.9644 -5.8992 20 6 1.0681 -0.8025 -5.7213 21 7 1.1811 -0.1376 -4.5827 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7087 1.1615 3.4843 26 1 2.9173 -1.1205 -1.0286 27 1 3.4863 1.5523 -1.3973 28 1 4.2360 0.2704 -2.3784 29 1 3.4580 1.6593 -3.1740 30 1 3.2176 -3.2854 -4.9736 31 1 1.7313 -2.5284 -6.8174 32 1 0.4120 -0.4450 -6.5012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930867086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:14 Heat of formation + Delta-G solvation = 46.197405 kcal Electronic energy + Delta-G solvation = -14778.844937 eV Core-core repulsion = 12353.506186 eV Total energy + Delta-G solvation = -2425.338750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.79004 -36.58658 -33.48462 -33.42941 -31.54960 -29.77333 -26.89294 -25.21151 -24.52583 -24.23531 -21.21615 -19.56879 -17.33084 -17.04427 -16.15835 -15.16502 -14.84207 -14.72642 -13.88457 -13.77611 -13.41370 -13.20319 -12.37511 -12.31252 -11.74366 -11.42583 -10.95204 -10.82233 -10.64506 -10.62590 -10.47924 -10.30924 -10.09272 -9.93384 -9.30985 -8.98442 -8.78955 -8.45435 -7.24919 -5.99870 -4.05618 1.09644 1.29574 3.31207 3.39009 3.43788 3.97387 4.15793 4.37696 4.45166 4.69927 5.08379 5.22152 5.30987 5.41894 5.53175 5.66002 5.82713 5.86971 6.19092 6.36961 6.47447 6.65121 6.92636 7.19323 7.23094 7.26117 7.53609 7.81999 7.92973 8.30650 8.37486 8.45530 8.70496 9.05641 9.60072 11.06645 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048846 B = 0.006456 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.090292 B = 4335.984988 C = 4481.814659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.005 0.995 4 C -0.515 4.515 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.674 5.674 13 C 0.147 3.853 14 H 0.098 0.902 15 C -0.170 4.170 16 C 0.351 3.649 17 N -0.498 5.498 18 C 0.145 3.855 19 C -0.249 4.249 20 C 0.144 3.856 21 N -0.521 5.521 22 H 0.030 0.970 23 H 0.081 0.919 24 H 0.005 0.995 25 H 0.260 0.740 26 H 0.341 0.659 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.163 0.837 31 H 0.141 0.859 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -2.854 -14.547 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.023 0.977 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.306 5.306 13 C 0.034 3.966 14 H 0.116 0.884 15 C -0.229 4.229 16 C 0.084 3.916 17 N -0.211 5.211 18 C -0.022 4.022 19 C -0.271 4.271 20 C -0.023 4.023 21 N -0.235 5.235 22 H 0.049 0.951 23 H 0.100 0.900 24 H 0.024 0.976 25 H 0.070 0.930 26 H 0.160 0.840 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.180 0.820 31 H 0.159 0.841 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.909 -2.470 -13.696 14.047 hybrid contribution 0.869 -0.534 0.099 1.025 sum 2.779 -3.004 -13.597 14.199 Atomic orbital electron populations 1.21747 0.97952 0.99328 0.99418 1.19148 0.92512 0.92567 0.85246 0.97694 1.21287 1.31287 1.12487 0.90313 0.92090 1.24911 0.95078 0.95017 0.99015 1.69911 1.36718 1.22953 1.23323 0.86466 0.78582 0.79626 0.82867 1.19746 1.21125 1.21037 1.60597 1.33217 1.31777 1.05042 1.20210 0.98097 0.91929 0.86372 0.88419 1.22419 0.97559 1.00613 1.02354 1.23523 0.85474 0.88524 0.94116 1.68281 1.23014 1.06486 1.23360 1.23254 0.93471 0.97487 0.87973 1.22805 1.01588 1.00378 1.02300 1.23163 0.94358 0.90550 0.94180 1.68270 1.19394 1.34085 1.01782 0.95110 0.90000 0.97628 0.93010 0.83980 0.90885 0.92173 0.93193 0.81994 0.84129 0.82028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.18 37.16 0.34 -2.90 16 2 C 0.21 5.44 2.41 -68.87 -0.17 5.28 16 3 H 0.01 0.15 7.11 -51.93 -0.37 -0.22 16 4 C -0.52 -14.26 8.59 -34.44 -0.30 -14.55 16 5 H 0.06 1.68 7.62 -52.48 -0.40 1.28 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.67 -15.07 5.85 -102.16 -0.60 -15.67 16 13 C 0.15 2.87 2.80 -68.86 -0.19 2.67 16 14 H 0.10 2.02 7.09 -51.93 -0.37 1.65 16 15 C -0.17 -2.92 9.13 37.16 0.34 -2.58 16 16 C 0.35 6.37 6.59 -157.19 -1.04 5.33 16 17 N -0.50 -8.47 10.11 -10.73 -0.11 -8.58 16 18 C 0.15 1.87 11.30 -17.21 -0.19 1.67 16 19 C -0.25 -2.71 10.17 -39.32 -0.40 -3.11 16 20 C 0.14 1.81 11.31 -17.20 -0.19 1.62 16 21 N -0.52 -8.73 10.32 -10.72 -0.11 -8.84 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 24 H 0.00 0.11 7.43 -51.93 -0.39 -0.27 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.34 7.59 7.96 -39.29 -0.31 7.28 16 27 H 0.07 1.32 7.43 -51.93 -0.39 0.93 16 28 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 272.84 15.07 4.11 4.11 Total: -1.00 -30.73 272.84 -7.20 -37.93 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.21 Total: 4.50 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.89 Total: -4.95 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.19 Total: -58.00 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.73 -7.20 -37.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.127 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds