Wall clock time and date at job start Sun Mar 29 2020 22:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.46904 * 110.99921 * 275.00164 * 12 2 1 14 14 H 1.09004 * 109.46883 * 34.99652 * 13 12 2 15 15 C 1.52998 * 109.46894 * 274.99795 * 13 12 2 16 16 C 1.50698 * 109.47191 * 154.99610 * 13 12 2 17 17 N 1.31788 * 119.12435 * 44.73056 * 16 13 12 18 18 C 1.32339 * 120.82232 * 179.76172 * 17 16 13 19 19 C 1.38601 * 119.09688 * 0.49958 * 18 17 16 20 20 C 1.38590 * 118.40293 * 359.75160 * 19 18 17 21 21 N 1.31796 * 119.12227 * 224.99925 * 16 13 12 22 22 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 23 23 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.00890 * 111.00763 * 151.04479 * 12 2 1 27 27 H 1.09004 * 109.47239 * 299.99639 * 15 13 12 28 28 H 1.08997 * 109.47387 * 59.99877 * 15 13 12 29 29 H 1.09005 * 109.47024 * 179.97438 * 15 13 12 30 30 H 1.07994 * 120.45377 * 180.27725 * 18 17 16 31 31 H 1.08002 * 120.79593 * 179.77711 * 19 18 17 32 32 H 1.08003 * 120.44804 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 1.2576 0.9329 2.2906 15 6 3.4111 0.9808 2.3223 16 6 1.9786 -0.5677 3.6258 17 7 2.6837 -1.6735 3.7556 18 6 2.6216 -2.3909 4.8659 19 6 1.7936 -1.9703 5.8947 20 6 1.0638 -0.8052 5.7192 21 7 1.1809 -0.1375 4.5827 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7011 1.1560 -3.4844 26 1 2.9173 -1.1205 1.0287 27 1 4.2360 0.2705 2.3786 28 1 3.4862 1.5524 1.3973 29 1 3.4575 1.6601 3.1736 30 1 3.2054 -3.2938 4.9676 31 1 1.7191 -2.5366 6.8113 32 1 0.4087 -0.4469 6.4995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930867087.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:17 Heat of formation + Delta-G solvation = 46.352117 kcal Electronic energy + Delta-G solvation = -14779.442235 eV Core-core repulsion = 12354.110194 eV Total energy + Delta-G solvation = -2425.332041 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78870 -36.58565 -33.48300 -33.42822 -31.54771 -29.77205 -26.89141 -25.20750 -24.52317 -24.23535 -21.21372 -19.56694 -17.32917 -17.04383 -16.15429 -15.16336 -14.84130 -14.72163 -13.89188 -13.77663 -13.41233 -13.19947 -12.37201 -12.30926 -11.74216 -11.41494 -10.91820 -10.83709 -10.66940 -10.62358 -10.47489 -10.32594 -10.08736 -9.93006 -9.30789 -8.98422 -8.80482 -8.44249 -7.24759 -5.99310 -4.05279 1.09681 1.29668 3.34146 3.38230 3.41448 3.97251 4.16145 4.37718 4.45311 4.69994 5.08437 5.22240 5.31173 5.42023 5.53306 5.66149 5.82793 5.87053 6.19167 6.37101 6.47582 6.65178 6.92795 7.19444 7.23200 7.26245 7.53810 7.81747 7.93195 8.30945 8.37643 8.45793 8.70545 9.05475 9.60237 11.07059 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048774 B = 0.006459 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.941207 B = 4333.889513 C = 4478.948718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.213 3.787 3 H 0.005 0.995 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.674 5.674 13 C 0.147 3.853 14 H 0.098 0.902 15 C -0.170 4.170 16 C 0.351 3.649 17 N -0.498 5.498 18 C 0.145 3.855 19 C -0.248 4.248 20 C 0.144 3.856 21 N -0.521 5.521 22 H 0.082 0.918 23 H 0.030 0.970 24 H 0.005 0.995 25 H 0.261 0.739 26 H 0.341 0.659 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.163 0.837 31 H 0.141 0.859 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 -2.836 14.515 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.306 5.306 13 C 0.034 3.966 14 H 0.116 0.884 15 C -0.229 4.229 16 C 0.083 3.917 17 N -0.211 5.211 18 C -0.022 4.022 19 C -0.271 4.271 20 C -0.023 4.023 21 N -0.235 5.235 22 H 0.100 0.900 23 H 0.049 0.951 24 H 0.024 0.976 25 H 0.071 0.929 26 H 0.160 0.840 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.180 0.820 31 H 0.159 0.841 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.880 -2.445 13.657 14.001 hybrid contribution 0.877 -0.563 -0.089 1.046 sum 2.757 -3.008 13.568 14.168 Atomic orbital electron populations 1.21749 0.97963 0.99325 0.99426 1.19135 0.92494 0.92556 0.85209 0.97703 1.21213 1.31388 1.12604 0.90341 0.92201 1.24906 0.95048 0.95020 0.98983 1.69891 1.36557 1.22922 1.23532 0.86577 0.79049 0.79788 0.82061 1.20252 1.21345 1.20322 1.60593 1.33218 1.31780 1.05041 1.20208 0.98100 0.91934 0.86365 0.88415 1.22418 0.97557 1.00607 1.02366 1.23524 0.85518 0.88516 0.94100 1.68278 1.23063 1.06396 1.23378 1.23259 0.93429 0.97554 0.87949 1.22805 1.01608 1.00334 1.02319 1.23159 0.94374 0.90544 0.94179 1.68272 1.19181 1.34256 1.01818 0.89979 0.95121 0.97634 0.92896 0.83985 0.92180 0.90890 0.93185 0.81993 0.84130 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.17 37.16 0.34 -2.90 16 2 C 0.21 5.47 2.42 -68.87 -0.17 5.30 16 3 H 0.01 0.15 7.11 -51.93 -0.37 -0.22 16 4 C -0.52 -14.31 8.60 -34.44 -0.30 -14.61 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.54 11.31 55.43 0.63 -24.92 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.67 -15.08 5.84 -102.17 -0.60 -15.68 16 13 C 0.15 2.87 2.80 -68.86 -0.19 2.68 16 14 H 0.10 2.02 7.09 -51.93 -0.37 1.65 16 15 C -0.17 -2.92 9.13 37.16 0.34 -2.58 16 16 C 0.35 6.37 6.60 -157.20 -1.04 5.33 16 17 N -0.50 -8.47 10.10 -10.73 -0.11 -8.58 16 18 C 0.14 1.87 11.31 -17.20 -0.19 1.67 16 19 C -0.25 -2.71 10.17 -39.32 -0.40 -3.11 16 20 C 0.14 1.81 11.30 -17.21 -0.19 1.62 16 21 N -0.52 -8.74 10.32 -10.73 -0.11 -8.85 16 22 H 0.08 2.26 6.06 -51.93 -0.31 1.95 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.00 0.11 7.43 -51.93 -0.39 -0.27 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 26 H 0.34 7.59 7.96 -39.30 -0.31 7.28 16 27 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.07 1.32 7.43 -51.93 -0.39 0.93 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 272.82 15.07 4.11 4.11 Total: -1.00 -30.69 272.82 -7.20 -37.89 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.21 Total: 4.56 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.90 Total: -4.98 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.19 Total: -58.02 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.69 -7.20 -37.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867087.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.245 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds