Wall clock time and date at job start Sun Mar 29 2020 22:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.46904 * 110.99921 * 275.00164 * 12 2 1 14 14 H 1.09004 * 109.46883 * 34.99652 * 13 12 2 15 15 C 1.52998 * 109.46894 * 274.99795 * 13 12 2 16 16 C 1.50698 * 109.47191 * 154.99610 * 13 12 2 17 17 N 1.31788 * 119.12435 * 44.73056 * 16 13 12 18 18 C 1.32339 * 120.82232 * 179.76172 * 17 16 13 19 19 C 1.38601 * 119.09688 * 0.49958 * 18 17 16 20 20 C 1.38590 * 118.40293 * 359.75160 * 19 18 17 21 21 N 1.31796 * 119.12227 * 224.99925 * 16 13 12 22 22 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 23 23 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.00890 * 111.00763 * 151.04479 * 12 2 1 27 27 H 1.09004 * 109.47239 * 299.99639 * 15 13 12 28 28 H 1.08997 * 109.47387 * 59.99877 * 15 13 12 29 29 H 1.09005 * 109.47024 * 179.97438 * 15 13 12 30 30 H 1.07994 * 120.45377 * 180.27725 * 18 17 16 31 31 H 1.08002 * 120.79593 * 179.77711 * 19 18 17 32 32 H 1.08003 * 120.44804 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 1.2576 0.9329 2.2906 15 6 3.4111 0.9808 2.3223 16 6 1.9786 -0.5677 3.6258 17 7 2.6837 -1.6735 3.7556 18 6 2.6216 -2.3909 4.8659 19 6 1.7936 -1.9703 5.8947 20 6 1.0638 -0.8052 5.7192 21 7 1.1809 -0.1375 4.5827 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7011 1.1560 -3.4844 26 1 2.9173 -1.1205 1.0287 27 1 4.2360 0.2705 2.3786 28 1 3.4862 1.5524 1.3973 29 1 3.4575 1.6601 3.1736 30 1 3.2054 -3.2938 4.9676 31 1 1.7191 -2.5366 6.8113 32 1 0.4087 -0.4469 6.4995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930867087.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:17 Heat of formation + Delta-G solvation = 24.819472 kcal Electronic energy + Delta-G solvation = -14780.375961 eV Core-core repulsion = 12354.110194 eV Total energy + Delta-G solvation = -2426.265767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.89778 -38.29590 -35.28018 -34.57106 -33.09720 -31.33371 -28.69189 -27.28642 -25.79684 -25.31225 -22.73482 -21.41505 -18.87113 -18.33485 -17.58797 -16.83198 -16.25676 -15.91302 -15.69785 -15.21436 -14.82905 -14.28494 -14.26028 -13.92029 -13.39176 -13.18747 -12.81530 -12.60614 -12.40785 -12.27693 -12.17110 -11.95524 -11.75690 -11.53411 -10.91953 -10.56257 -10.35412 -10.08629 -9.06059 -8.11669 -6.25435 0.03641 0.29678 1.43847 1.45979 1.53612 2.42765 2.83402 2.98780 3.16616 3.32067 3.84836 3.87357 4.11920 4.21758 4.31505 4.34793 4.51919 4.75685 4.79547 4.84693 4.97385 5.05869 5.17104 5.20600 5.46531 5.55941 5.68193 5.84628 6.19085 6.22673 6.48369 6.75279 7.00616 7.28162 7.44421 8.94145 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048774 B = 0.006459 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.941207 B = 4333.889513 C = 4478.948718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.220 3.780 3 H -0.020 1.020 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.673 5.673 13 C 0.147 3.853 14 H 0.077 0.923 15 C -0.157 4.157 16 C 0.326 3.674 17 N -0.528 5.528 18 C 0.130 3.870 19 C -0.221 4.221 20 C 0.132 3.868 21 N -0.550 5.550 22 H 0.061 0.939 23 H 0.022 0.978 24 H 0.016 0.984 25 H 0.263 0.737 26 H 0.340 0.660 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.197 0.803 31 H 0.190 0.810 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.995 -4.288 16.220 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 H -0.002 1.002 4 C -0.575 4.575 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.305 5.305 13 C 0.035 3.965 14 H 0.095 0.905 15 C -0.217 4.217 16 C 0.057 3.943 17 N -0.242 5.242 18 C -0.035 4.035 19 C -0.242 4.242 20 C -0.033 4.033 21 N -0.265 5.265 22 H 0.080 0.920 23 H 0.041 0.959 24 H 0.035 0.965 25 H 0.072 0.928 26 H 0.158 0.842 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.214 0.786 31 H 0.207 0.793 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.347 -3.907 15.399 16.060 hybrid contribution 0.708 -0.149 -0.440 0.846 sum 3.055 -4.055 14.960 15.798 Atomic orbital electron populations 1.21573 0.98183 0.98487 0.98936 1.18907 0.92262 0.91311 0.86368 1.00249 1.21513 1.31723 1.12798 0.91497 0.92382 1.25717 0.95108 0.95687 1.01950 1.70016 1.37305 1.24054 1.24257 0.85530 0.78776 0.78540 0.78260 1.19874 1.20831 1.19472 1.60484 1.33149 1.32265 1.04583 1.20095 0.98270 0.91659 0.86490 0.90482 1.22263 0.96669 1.00556 1.02207 1.22933 0.87698 0.89592 0.94032 1.68183 1.23698 1.06575 1.25727 1.23953 0.94131 0.98137 0.87298 1.23293 0.98715 0.99155 1.03081 1.23900 0.94926 0.90963 0.93555 1.68194 1.19464 1.35667 1.03128 0.92016 0.95903 0.96469 0.92784 0.84155 0.91732 0.92528 0.91407 0.78626 0.79318 0.78327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.00 9.17 71.98 0.66 -5.34 16 2 C 0.22 11.65 2.42 44.17 0.11 11.75 16 3 H -0.02 -1.14 7.11 -2.38 -0.02 -1.16 16 4 C -0.54 -30.29 8.60 25.60 0.22 -30.07 16 5 H 0.06 3.22 7.62 -2.91 -0.02 3.20 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -53.55 11.31 21.45 0.24 -53.31 16 8 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 N -0.67 -30.91 5.84 -477.15 -2.79 -33.70 16 13 C 0.15 5.91 2.80 44.17 0.12 6.03 16 14 H 0.08 3.33 7.09 -2.39 -0.02 3.32 16 15 C -0.16 -5.54 9.13 71.98 0.66 -4.88 16 16 C 0.33 11.73 6.60 138.75 0.92 12.65 16 17 N -0.53 -17.40 10.10 -187.85 -1.90 -19.29 16 18 C 0.13 2.96 11.31 84.70 0.96 3.92 16 19 C -0.22 -3.88 10.17 22.44 0.23 -3.66 16 20 C 0.13 2.91 11.30 84.70 0.96 3.87 16 21 N -0.55 -17.87 10.32 -187.85 -1.94 -19.80 16 22 H 0.06 3.51 6.06 -2.39 -0.01 3.49 16 23 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.02 0.81 7.43 -2.39 -0.02 0.80 16 25 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 26 H 0.34 15.52 7.96 -89.70 -0.71 14.80 16 27 H 0.06 2.18 8.13 -2.39 -0.02 2.16 16 28 H 0.06 2.13 7.43 -2.39 -0.02 2.12 16 29 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.20 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -67.74 272.82 1.32 -66.42 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.40 Total: 17.98 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.28 Total: -4.46 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -6.38 Total: -126.11 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.74 1.32 -66.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867087.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.240 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds