Wall clock time and date at job start Sun Mar 29 2020 21:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86806 * 119.99542 * 2 1 4 4 H 1.48502 * 109.46946 * 269.99592 * 3 2 1 5 5 H 1.48493 * 109.47225 * 30.00161 * 3 2 1 6 6 H 1.48505 * 109.46905 * 150.00378 * 3 2 1 7 7 C 1.38948 * 120.00469 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00069 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00202 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99957 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00368 * 179.97438 * 10 9 7 13 13 H 1.09002 * 115.50914 * 325.36595 * 12 10 9 14 14 C 1.57348 * 116.69267 * 111.02972 * 12 10 9 15 15 H 1.09002 * 121.70529 * 355.48251 * 14 12 10 16 16 C 1.52999 * 117.43221 * 180.02562 * 12 10 9 17 17 H 1.08999 * 119.98746 * 5.86440 * 16 12 10 18 18 C 1.55927 * 117.17813 * 160.67249 * 16 12 10 19 19 H 1.09001 * 115.92007 * 264.46681 * 18 16 12 20 20 C 1.56192 * 104.45687 * 134.81744 * 18 16 12 21 21 C 1.54581 * 104.51889 * 289.63685 * 20 18 16 22 22 C 1.55922 * 104.74276 * 0.08786 * 21 20 18 23 23 H 1.09000 * 115.92319 * 199.90528 * 22 21 20 24 24 C 1.56943 * 100.65526 * 326.16021 * 22 21 20 25 25 H 0.96997 * 120.00067 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00178 * 359.97438 * 9 7 2 27 27 H 1.09000 * 110.44260 * 170.89646 * 20 18 16 28 28 H 1.09004 * 110.48567 * 48.39642 * 20 18 16 29 29 H 1.09002 * 110.40287 * 241.23960 * 21 20 18 30 30 H 1.08998 * 110.40286 * 118.93707 * 21 20 18 31 31 H 1.09001 * 112.03362 * 170.30814 * 24 22 21 32 32 H 1.09002 * 112.02981 * 296.82897 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3236 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5578 0.0010 12 6 1.2440 -4.8629 0.0011 13 1 0.3085 -4.8646 0.5606 14 6 1.3271 -5.7275 -1.3109 15 1 1.8401 -5.3675 -2.2027 16 6 2.0677 -6.1522 0.0017 17 1 3.1524 -6.1057 0.0981 18 6 1.3481 -7.4569 0.4614 19 1 1.4799 -7.7302 1.5083 20 6 1.7667 -8.5267 -0.5969 21 6 1.0259 -8.1062 -1.8869 22 6 0.2330 -6.8239 -1.4891 23 1 -0.6035 -6.5609 -2.1365 24 6 -0.1223 -7.1538 0.0035 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3907 0.0005 27 1 1.4466 -9.5198 -0.2815 28 1 2.8451 -8.5061 -0.7542 29 1 0.3416 -8.8925 -2.2056 30 1 1.7401 -7.8810 -2.6789 31 1 -0.5432 -6.2932 0.5235 32 1 -0.7652 -8.0302 0.0867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:37 Heat of formation + Delta-G solvation = -25.361155 kcal Electronic energy + Delta-G solvation = -14878.288834 eV Core-core repulsion = 12417.554321 eV Total energy + Delta-G solvation = -2460.734513 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.93784 -39.70106 -36.08002 -34.09597 -33.24644 -29.82202 -28.89540 -27.55515 -24.86228 -22.51323 -21.46650 -20.26946 -19.54901 -19.37828 -18.17625 -16.93623 -16.64290 -16.24070 -15.86792 -15.31541 -15.00033 -13.88110 -13.65080 -13.55225 -13.16963 -12.94377 -12.49825 -12.39036 -12.31116 -12.14639 -12.13142 -11.95400 -11.73876 -11.58577 -11.17891 -10.65496 -10.49394 -10.33339 -10.07903 -8.52015 -6.01916 1.33152 1.38755 1.52452 1.80071 2.26024 2.75483 2.96418 3.21925 3.59406 3.64305 3.71674 3.96833 4.11698 4.22379 4.39659 4.42439 4.49002 4.54438 4.63925 4.74353 4.93000 5.09264 5.12155 5.21006 5.26884 5.28930 5.30666 5.35595 5.44564 5.55997 5.94189 6.52425 7.04954 7.48781 8.04310 8.65506 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.063513 B = 0.006165 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.747737 B = 4540.492435 C = 4706.843263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.342 4.342 8 H 0.078 0.922 9 N -0.563 5.563 10 C 0.461 3.539 11 O -0.642 6.642 12 C -0.158 4.158 13 H 0.131 0.869 14 C -0.143 4.143 15 H 0.096 0.904 16 C -0.130 4.130 17 H 0.088 0.912 18 C -0.070 4.070 19 H 0.111 0.889 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.069 4.069 23 H 0.111 0.889 24 C -0.131 4.131 25 H 0.280 0.720 26 H 0.397 0.603 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -14.946 -1.583 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.471 4.471 8 H 0.096 0.904 9 N -0.198 5.198 10 C 0.249 3.751 11 O -0.531 6.531 12 C -0.179 4.179 13 H 0.149 0.851 14 C -0.162 4.162 15 H 0.114 0.886 16 C -0.149 4.149 17 H 0.106 0.894 18 C -0.088 4.088 19 H 0.129 0.871 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.087 4.087 23 H 0.129 0.871 24 C -0.168 4.168 25 H 0.090 0.910 26 H 0.231 0.769 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.276 -14.781 -1.592 15.223 hybrid contribution 0.299 1.400 -0.005 1.432 sum -2.977 -13.380 -1.597 13.800 Atomic orbital electron populations 1.69681 1.06924 1.29570 1.49590 1.26123 0.96611 1.02558 0.95810 0.84874 0.77842 0.76449 0.78812 1.19411 1.19092 1.19778 1.19719 0.92725 0.84064 1.50600 0.90434 1.41881 1.09338 1.04586 1.63977 1.20012 0.87379 0.85516 0.82155 1.90454 1.16135 1.88224 1.58249 1.22805 1.01706 0.89151 1.04236 0.85116 1.24671 1.02519 0.99030 0.89947 0.88587 1.23892 0.97512 0.92526 1.00927 0.89361 1.23320 0.94510 0.91654 0.99332 0.87062 1.22564 0.99881 0.98302 0.94232 1.22540 0.98894 0.96306 0.97365 1.23244 0.95403 0.92382 0.97663 0.87099 1.23740 0.96075 1.02073 0.94934 0.91037 0.76902 0.89180 0.92516 0.89194 0.92481 0.91376 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 2 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 3 Si 1.00 43.82 29.55 68.60 2.03 45.84 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.34 -20.35 9.68 84.04 0.81 -19.54 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.56 -31.05 5.29 -306.99 -1.62 -32.67 16 10 C 0.46 24.13 7.56 87.66 0.66 24.80 16 11 O -0.64 -38.66 15.93 -3.09 -0.05 -38.71 16 12 C -0.16 -6.17 5.49 -10.01 -0.05 -6.22 16 13 H 0.13 4.53 6.07 -2.39 -0.01 4.52 16 14 C -0.14 -4.71 6.53 -7.00 -0.05 -4.75 16 15 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 16 C -0.13 -4.38 5.83 -8.53 -0.05 -4.43 16 17 H 0.09 3.46 7.83 -2.39 -0.02 3.44 16 18 C -0.07 -1.64 5.18 -7.28 -0.04 -1.67 16 19 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 20 C -0.11 -2.16 6.23 32.24 0.20 -1.96 16 21 C -0.11 -2.17 6.20 32.14 0.20 -1.97 16 22 C -0.07 -1.59 5.12 -7.39 -0.04 -1.63 16 23 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 24 C -0.13 -2.76 6.23 33.37 0.21 -2.55 16 25 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 26 H 0.40 20.83 7.90 -92.70 -0.73 20.10 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.20 8.05 -2.38 -0.02 1.18 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.19 8.03 -2.39 -0.02 1.17 16 31 H 0.07 1.58 5.94 -2.39 -0.01 1.57 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -69.15 262.82 3.36 -65.79 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.40 Total: 30.27 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 2.33 Total: -20.07 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -1.34 Total: -83.14 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.05 Total: -38.71 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.15 3.36 -65.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.434 kcal (2) G-P(sol) polarization free energy of solvation -69.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds