Wall clock time and date at job start Sun Mar 29 2020 22:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.81655 * 2 1 4 4 C 1.53527 * 109.82648 * 120.93881 * 2 1 3 5 5 N 1.46858 * 109.90077 * 169.44035 * 4 2 1 6 6 C 1.46903 * 110.99660 * 51.41856 * 5 4 2 7 7 C 1.50699 * 109.46840 * 169.99968 * 6 5 4 8 8 H 1.08006 * 120.00212 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00302 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99708 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00439 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47141 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47295 * 119.99715 * 11 9 7 14 14 H 1.48500 * 109.47598 * 240.00148 * 11 9 7 15 15 C 1.47321 * 111.70507 * 286.94990 * 5 4 2 16 16 C 1.50862 * 108.04011 * 51.96575 * 15 5 4 17 17 C 1.34364 * 129.07320 * 163.78170 * 16 15 5 18 18 N 1.35273 * 107.60573 * 180.38129 * 17 16 15 19 19 H 0.97001 * 125.99938 * 179.76304 * 18 17 16 20 20 N 1.40392 * 108.00654 * 359.49037 * 18 17 16 21 21 C 1.29846 * 108.09094 * 0.28628 * 20 18 17 22 22 H 1.08994 * 109.47528 * 180.86457 * 1 2 3 23 23 H 1.09008 * 109.46804 * 300.85992 * 1 2 3 24 24 H 1.08995 * 109.47337 * 60.85662 * 1 2 3 25 25 H 1.09006 * 109.39701 * 289.57103 * 4 2 1 26 26 H 1.09003 * 109.40013 * 49.39459 * 4 2 1 27 27 H 1.08998 * 109.47156 * 289.99552 * 6 5 4 28 28 H 1.08998 * 109.47157 * 49.99799 * 6 5 4 29 29 H 0.96995 * 119.99890 * 180.02562 * 10 9 7 30 30 H 1.08995 * 109.74750 * 171.60587 * 15 5 4 31 31 H 1.09002 * 109.74794 * 292.28065 * 15 5 4 32 32 H 1.07992 * 126.19922 * 0.24102 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0255 0.0000 4 6 2.0507 -0.7425 1.2388 5 7 3.4973 -0.9646 1.1171 6 6 4.1971 0.2871 0.7986 7 6 5.6841 0.0768 0.9228 8 1 6.0707 -0.8899 1.2101 9 6 6.5513 1.1185 0.6698 10 7 6.0805 2.2958 0.3205 11 14 8.3945 0.8581 0.8245 12 1 8.6640 -0.5453 1.2285 13 1 9.0443 1.1296 -0.4829 14 1 8.9408 1.7825 1.8502 15 6 3.8066 -2.0095 0.1256 16 6 3.0939 -1.6615 -1.1577 17 6 3.3015 -2.1363 -2.3973 18 7 2.4240 -1.5215 -3.2232 19 1 2.3451 -1.6642 -4.1794 20 7 1.6433 -0.6454 -2.4525 21 6 2.0420 -0.7287 -1.2195 22 1 -0.3634 -1.0275 0.0155 23 1 -0.3633 0.5272 0.8823 24 1 -0.3634 0.5004 -0.8975 25 1 1.8495 -0.1467 2.1291 26 1 1.5440 -1.7038 1.3243 27 1 3.9567 0.5885 -0.2209 28 1 3.8811 1.0665 1.4919 29 1 6.6905 3.0285 0.1421 30 1 4.8820 -2.0453 -0.0483 31 1 3.4601 -2.9767 0.4896 32 1 4.0372 -2.8733 -2.6831 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931451320.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:07 Heat of formation + Delta-G solvation = 75.770866 kcal Electronic energy + Delta-G solvation = -15405.160453 eV Core-core repulsion = 12981.104104 eV Total energy + Delta-G solvation = -2424.056349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08084 -37.39316 -33.56206 -32.33711 -30.40003 -29.69932 -27.18690 -25.94348 -23.62421 -22.87423 -20.74454 -20.04835 -18.03130 -17.29459 -16.11096 -15.12537 -14.61401 -14.42983 -14.09407 -13.50557 -13.32827 -12.82877 -12.57426 -12.06852 -11.93685 -11.42244 -11.16087 -11.10014 -10.98665 -10.65359 -10.49277 -10.43762 -10.02272 -9.70951 -9.11394 -8.95412 -8.38967 -7.89286 -7.18780 -5.96744 -3.97027 2.34340 3.22907 3.26769 3.33268 3.40732 3.45076 4.46923 4.92263 5.09697 5.17516 5.38508 5.40085 5.58363 5.74288 5.91828 6.01489 6.11592 6.23079 6.27284 6.34933 6.43352 6.51946 6.61750 6.81660 7.12841 7.35824 7.52102 7.69709 7.85778 8.09319 8.17060 8.27602 8.62648 9.10415 9.66144 11.14263 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031327 B = 0.009450 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.570172 B = 2962.262299 C = 3277.074703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.049 4.049 3 H 0.094 0.906 4 C 0.065 3.935 5 N -0.532 5.532 6 C 0.190 3.810 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.054 3.946 10 N -0.898 5.898 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.287 1.287 14 H -0.284 1.284 15 C 0.135 3.865 16 C -0.248 4.248 17 C 0.053 3.947 18 N -0.497 5.497 19 H 0.432 0.568 20 N -0.294 5.294 21 C 0.098 3.902 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.001 0.999 28 H 0.028 0.972 29 H 0.259 0.741 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 -7.954 -3.509 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 H 0.112 0.888 4 C -0.064 4.064 5 N -0.253 5.253 6 C 0.065 3.935 7 C -0.542 4.542 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.213 1.213 14 H -0.211 1.211 15 C 0.006 3.994 16 C -0.261 4.261 17 C -0.091 4.091 18 N -0.206 5.206 19 H 0.275 0.725 20 N -0.116 5.116 21 C -0.071 4.071 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.019 0.981 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.159 -7.400 -3.865 11.673 hybrid contribution 1.398 -0.108 -0.991 1.717 sum -6.761 -7.508 -4.856 11.210 Atomic orbital electron populations 1.21670 0.94235 1.01532 1.01757 1.20518 0.95588 0.99987 0.90994 0.88763 1.22252 0.90003 0.98959 0.95227 1.62390 1.05477 1.11467 1.45974 1.19754 0.93329 0.85257 0.95191 1.21213 0.90759 0.97081 1.45164 0.91876 1.24973 0.98879 0.95191 0.95598 1.69973 1.34603 1.01662 1.47560 0.86502 0.85542 0.78263 0.77462 1.19634 1.21325 1.21068 1.20630 0.99816 0.94242 0.84724 1.21160 1.03210 1.04242 0.97440 1.21895 0.96402 1.00028 0.90822 1.46281 1.29520 1.34936 1.09839 0.72517 1.76770 1.17890 1.13348 1.03570 1.22200 0.95248 0.96683 0.93010 0.93026 0.92219 0.92506 0.90555 0.91878 0.98108 0.95432 0.93130 0.89024 0.91907 0.81137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.17 37.16 0.34 -1.61 16 2 C -0.05 -0.88 2.51 -91.35 -0.23 -1.11 16 3 H 0.09 1.93 7.21 -51.93 -0.37 1.55 16 4 C 0.07 1.18 5.23 -3.57 -0.02 1.16 16 5 N -0.53 -11.47 4.92 -236.74 -1.16 -12.63 16 6 C 0.19 4.94 3.72 -4.97 -0.02 4.92 16 7 C -0.50 -14.10 8.33 -34.44 -0.29 -14.38 16 8 H 0.06 1.74 7.16 -52.48 -0.38 1.36 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 11 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.14 2.64 6.01 -4.67 -0.03 2.61 16 16 C -0.25 -4.71 5.35 -104.97 -0.56 -5.27 16 17 C 0.05 0.85 11.96 -17.40 -0.21 0.64 16 18 N -0.50 -7.73 7.38 30.33 0.22 -7.50 16 19 H 0.43 4.95 8.96 -182.38 -1.63 3.32 16 20 N -0.29 -5.58 12.62 33.77 0.43 -5.15 16 21 C 0.10 1.93 5.73 -82.34 -0.47 1.45 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.06 1.02 8.03 -51.93 -0.42 0.61 16 27 H 0.00 0.03 5.97 -51.93 -0.31 -0.28 16 28 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.09 1.91 6.58 -51.93 -0.34 1.57 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.17 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 261.59 15.07 3.94 3.94 Total: -1.00 -32.43 261.59 -7.98 -40.41 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.54 Total: 0.67 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -1.58 Total: -10.14 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.22 Total: -51.58 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.43 -7.98 -40.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931451320.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.182 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds