Wall clock time and date at job start Sun Mar 29 2020 22:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.81655 * 2 1 4 4 C 1.53527 * 109.82648 * 120.93881 * 2 1 3 5 5 N 1.46858 * 109.90077 * 169.44035 * 4 2 1 6 6 C 1.46903 * 110.99660 * 51.41856 * 5 4 2 7 7 C 1.50699 * 109.46840 * 169.99968 * 6 5 4 8 8 H 1.08006 * 120.00212 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00302 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99708 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00439 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47141 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47295 * 119.99715 * 11 9 7 14 14 H 1.48500 * 109.47598 * 240.00148 * 11 9 7 15 15 C 1.47321 * 111.70507 * 286.94990 * 5 4 2 16 16 C 1.50862 * 108.04011 * 51.96575 * 15 5 4 17 17 C 1.34364 * 129.07320 * 163.78170 * 16 15 5 18 18 N 1.35273 * 107.60573 * 180.38129 * 17 16 15 19 19 H 0.97001 * 125.99938 * 179.76304 * 18 17 16 20 20 N 1.40392 * 108.00654 * 359.49037 * 18 17 16 21 21 C 1.29846 * 108.09094 * 0.28628 * 20 18 17 22 22 H 1.08994 * 109.47528 * 180.86457 * 1 2 3 23 23 H 1.09008 * 109.46804 * 300.85992 * 1 2 3 24 24 H 1.08995 * 109.47337 * 60.85662 * 1 2 3 25 25 H 1.09006 * 109.39701 * 289.57103 * 4 2 1 26 26 H 1.09003 * 109.40013 * 49.39459 * 4 2 1 27 27 H 1.08998 * 109.47156 * 289.99552 * 6 5 4 28 28 H 1.08998 * 109.47157 * 49.99799 * 6 5 4 29 29 H 0.96995 * 119.99890 * 180.02562 * 10 9 7 30 30 H 1.08995 * 109.74750 * 171.60587 * 15 5 4 31 31 H 1.09002 * 109.74794 * 292.28065 * 15 5 4 32 32 H 1.07992 * 126.19922 * 0.24102 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0255 0.0000 4 6 2.0507 -0.7425 1.2388 5 7 3.4973 -0.9646 1.1171 6 6 4.1971 0.2871 0.7986 7 6 5.6841 0.0768 0.9228 8 1 6.0707 -0.8899 1.2101 9 6 6.5513 1.1185 0.6698 10 7 6.0805 2.2958 0.3205 11 14 8.3945 0.8581 0.8245 12 1 8.6640 -0.5453 1.2285 13 1 9.0443 1.1296 -0.4829 14 1 8.9408 1.7825 1.8502 15 6 3.8066 -2.0095 0.1256 16 6 3.0939 -1.6615 -1.1577 17 6 3.3015 -2.1363 -2.3973 18 7 2.4240 -1.5215 -3.2232 19 1 2.3451 -1.6642 -4.1794 20 7 1.6433 -0.6454 -2.4525 21 6 2.0420 -0.7287 -1.2195 22 1 -0.3634 -1.0275 0.0155 23 1 -0.3633 0.5272 0.8823 24 1 -0.3634 0.5004 -0.8975 25 1 1.8495 -0.1467 2.1291 26 1 1.5440 -1.7038 1.3243 27 1 3.9567 0.5885 -0.2209 28 1 3.8811 1.0665 1.4919 29 1 6.6905 3.0285 0.1421 30 1 4.8820 -2.0453 -0.0483 31 1 3.4601 -2.9767 0.4896 32 1 4.0372 -2.8733 -2.6831 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931451320.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:06 Heat of formation + Delta-G solvation = 51.898817 kcal Electronic energy + Delta-G solvation = -15406.195623 eV Core-core repulsion = 12981.104104 eV Total energy + Delta-G solvation = -2425.091518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.45822 -38.95319 -35.25271 -34.23327 -31.81849 -31.16890 -29.10894 -27.36258 -25.42895 -24.37918 -22.40833 -21.40812 -19.55282 -18.78020 -18.07651 -16.75526 -16.31287 -15.97680 -15.76565 -14.98042 -14.91087 -14.20390 -14.05022 -13.92210 -13.52940 -12.90009 -12.89147 -12.60260 -12.45555 -12.40045 -12.30726 -12.10541 -11.68585 -11.36106 -11.16040 -10.57340 -10.32194 -9.27390 -8.92394 -8.14588 -6.23265 1.01418 1.42224 1.43390 1.56716 1.82336 2.04380 2.43890 3.18494 3.43974 3.62345 3.89086 4.04845 4.27923 4.41803 4.59346 4.65885 4.79162 4.82233 4.93077 4.99353 5.01953 5.17948 5.25139 5.29513 5.35446 5.46091 5.71069 5.72815 6.13786 6.41905 6.54482 6.72122 6.78397 6.94647 7.45660 8.96758 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031327 B = 0.009450 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.570172 B = 2962.262299 C = 3277.074703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.048 4.048 3 H 0.057 0.943 4 C 0.067 3.933 5 N -0.541 5.541 6 C 0.213 3.787 7 C -0.515 4.515 8 H 0.067 0.933 9 C -0.002 4.002 10 N -0.938 5.938 11 Si 0.966 3.034 12 H -0.258 1.258 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.140 3.860 16 C -0.288 4.288 17 C 0.075 3.925 18 N -0.482 5.482 19 H 0.450 0.550 20 N -0.320 5.320 21 C 0.078 3.922 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.089 0.911 27 H -0.031 1.031 28 H -0.004 1.004 29 H 0.261 0.739 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 -9.856 -3.887 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.070 4.070 3 H 0.076 0.924 4 C -0.062 4.062 5 N -0.262 5.262 6 C 0.087 3.913 7 C -0.554 4.554 8 H 0.085 0.915 9 C -0.199 4.199 10 N -0.579 5.579 11 Si 0.791 3.209 12 H -0.182 1.182 13 H -0.209 1.209 14 H -0.207 1.207 15 C 0.011 3.989 16 C -0.301 4.301 17 C -0.072 4.072 18 N -0.193 5.193 19 H 0.297 0.703 20 N -0.143 5.143 21 C -0.091 4.091 22 H 0.082 0.918 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.108 0.892 27 H -0.013 1.013 28 H 0.014 0.986 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.846 -9.321 -4.258 12.906 hybrid contribution 1.253 0.448 -0.935 1.627 sum -6.592 -8.872 -5.193 12.213 Atomic orbital electron populations 1.21587 0.91439 1.02546 1.02451 1.20453 0.97900 0.97754 0.90933 0.92437 1.22332 0.88102 1.00430 0.95382 1.62281 1.07367 1.09721 1.46835 1.19273 0.93125 0.86560 0.92344 1.21563 0.91919 0.97199 1.44671 0.91529 1.25903 1.04041 0.94792 0.95152 1.70121 1.36412 1.02665 1.48728 0.85376 0.79242 0.78800 0.77460 1.18156 1.20930 1.20693 1.20573 0.98869 0.94515 0.84919 1.21288 1.04233 1.05983 0.98553 1.22488 0.95770 0.99226 0.89669 1.46329 1.28547 1.33657 1.10745 0.70310 1.76691 1.19241 1.14660 1.03695 1.22417 0.95953 0.97254 0.93490 0.91766 0.90238 0.93070 0.90130 0.89237 1.01317 0.98609 0.93065 0.90919 0.89098 0.76872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 9.17 71.98 0.66 -2.79 16 2 C -0.05 -1.77 2.51 -11.26 -0.03 -1.80 16 3 H 0.06 2.50 7.21 -2.39 -0.02 2.49 16 4 C 0.07 2.38 5.23 86.49 0.45 2.83 16 5 N -0.54 -23.38 4.92 -902.92 -4.44 -27.82 16 6 C 0.21 11.48 3.72 85.56 0.32 11.79 16 7 C -0.52 -29.21 8.33 25.60 0.21 -29.00 16 8 H 0.07 3.65 7.16 -2.91 -0.02 3.63 16 9 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 10 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 11 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 12 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 C 0.14 5.32 6.01 85.53 0.51 5.83 16 16 C -0.29 -10.61 5.35 -20.09 -0.11 -10.72 16 17 C 0.07 2.18 11.96 83.28 1.00 3.18 16 18 N -0.48 -14.00 7.38 -57.97 -0.43 -14.43 16 19 H 0.45 9.18 8.96 -213.13 -1.91 7.27 16 20 N -0.32 -11.94 12.62 -47.07 -0.59 -12.53 16 21 C 0.08 3.03 5.73 43.56 0.25 3.28 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 26 H 0.09 2.72 8.03 -2.39 -0.02 2.70 16 27 H -0.03 -1.84 5.97 -2.39 -0.01 -1.86 16 28 H 0.00 -0.25 8.08 -2.39 -0.02 -0.27 16 29 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.07 2.99 6.58 -2.39 -0.02 2.97 16 31 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.21 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -71.13 261.59 -0.21 -71.34 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -0.79 Total: 11.40 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.73 Total: -17.04 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -5.18 Total: -112.29 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.13 -0.21 -71.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931451320.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.238 kcal (2) G-P(sol) polarization free energy of solvation -71.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds