Wall clock time and date at job start Sun Mar 29 2020 22:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99962 * 2 1 4 4 H 1.48494 * 109.47014 * 269.99567 * 3 2 1 5 5 H 1.48498 * 109.46974 * 29.99610 * 3 2 1 6 6 H 1.48499 * 109.46960 * 149.99503 * 3 2 1 7 7 C 1.37875 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46965 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46990 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47104 * 179.97438 * 11 10 9 13 13 C 1.48072 * 110.99780 * 188.73053 * 12 11 10 14 14 C 1.54633 * 101.99773 * 264.97765 * 13 12 11 15 15 N 1.47198 * 103.02113 * 335.15346 * 14 13 12 16 16 C 1.37490 * 143.31344 * 196.00685 * 15 14 13 17 17 C 1.34356 * 106.82183 * 179.25265 * 16 15 14 18 18 N 1.34261 * 108.33007 * 0.07732 * 17 16 15 19 19 C 1.31871 * 109.46061 * 0.30442 * 18 17 16 20 20 H 0.96998 * 120.00302 * 0.02562 * 1 2 3 21 21 H 1.08991 * 109.47013 * 60.00048 * 9 7 2 22 22 H 1.08999 * 109.47114 * 299.99605 * 9 7 2 23 23 H 1.08991 * 109.47334 * 60.00099 * 10 9 7 24 24 H 1.08999 * 109.46764 * 299.99674 * 10 9 7 25 25 H 1.09001 * 109.47235 * 59.99207 * 11 10 9 26 26 H 1.09008 * 109.46741 * 299.99598 * 11 10 9 27 27 H 1.08997 * 110.93110 * 23.14578 * 13 12 11 28 28 H 1.09008 * 110.92305 * 146.79153 * 13 12 11 29 29 H 1.09001 * 110.68256 * 216.78053 * 14 13 12 30 30 H 1.08998 * 110.87073 * 93.61818 * 14 13 12 31 31 H 1.07999 * 126.58380 * 359.22892 * 16 15 14 32 32 H 1.08006 * 125.83678 * 180.09468 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1037 0.0018 13 6 1.7413 -7.3948 -0.2086 14 6 1.5318 -7.8873 1.2421 15 7 2.6045 -7.2035 1.9827 16 6 3.3037 -7.2090 3.1665 17 6 4.2035 -6.2141 3.0913 18 7 4.0661 -5.6097 1.9003 19 6 3.0973 -6.1922 1.2212 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8712 -3.6040 0.8922 24 1 2.8725 -3.6047 -0.8877 25 1 0.8545 -5.0449 -0.8894 26 1 0.8527 -5.0447 0.8906 27 1 0.7855 -7.2461 -0.7109 28 1 2.3698 -8.0877 -0.7682 29 1 1.6509 -8.9691 1.3024 30 1 0.5531 -7.5873 1.6166 31 1 3.1573 -7.8833 3.9974 32 1 4.9158 -5.9465 3.8578 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931525944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:36 Heat of formation + Delta-G solvation = 89.928700 kcal Electronic energy + Delta-G solvation = -14766.184497 eV Core-core repulsion = 12342.742078 eV Total energy + Delta-G solvation = -2423.442419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.41875 -37.89129 -34.45981 -32.87499 -31.07233 -28.80787 -28.54440 -26.27909 -23.30593 -22.67967 -21.08048 -20.34257 -19.57185 -16.89753 -16.17916 -16.00405 -15.41272 -14.95061 -14.36483 -13.95473 -13.77748 -13.72486 -13.00739 -12.73073 -12.28801 -12.15858 -11.57716 -11.40562 -10.80288 -10.59058 -10.46352 -9.72596 -9.65151 -9.48969 -9.35563 -9.21406 -8.98032 -8.26963 -7.82141 -5.92747 -3.93553 2.08491 2.62127 3.23824 3.38993 3.41351 3.44374 3.50428 4.22820 4.53325 4.54618 4.71105 4.90142 5.08634 5.33112 5.42199 5.43491 5.53694 5.68790 5.73148 6.12019 6.24926 6.32064 6.55422 6.80634 6.98522 7.13902 7.25047 7.53629 7.76456 7.89438 8.08154 8.29628 8.52776 9.13419 9.70098 11.19006 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041383 B = 0.006254 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.442118 B = 4476.105976 C = 4881.027332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.108 4.108 11 C 0.059 3.941 12 N -0.452 5.452 13 C 0.042 3.958 14 C 0.073 3.927 15 N -0.515 5.515 16 C -0.042 4.042 17 C -0.012 4.012 18 N -0.466 5.466 19 C 0.378 3.622 20 H 0.259 0.741 21 H 0.015 0.985 22 H 0.012 0.988 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.036 0.964 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -17.958 3.110 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.067 4.067 12 N -0.175 5.175 13 C -0.086 4.086 14 C -0.050 4.050 15 N -0.206 5.206 16 C -0.173 4.173 17 C -0.161 4.161 18 N -0.188 5.188 19 C 0.027 3.973 20 H 0.069 0.931 21 H 0.033 0.967 22 H 0.030 0.970 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.054 0.946 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.187 0.813 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.139 -17.252 2.512 17.565 hybrid contribution -0.655 0.015 0.995 1.191 sum 1.484 -17.237 3.507 17.653 Atomic orbital electron populations 1.69967 1.06064 1.26469 1.51473 1.25019 0.94846 0.99252 0.95447 0.86583 0.79947 0.83378 0.78086 1.20663 1.21326 1.19768 1.21263 0.93232 0.90881 1.49796 0.92478 1.19052 0.93888 0.91485 0.96850 1.21692 0.99188 0.91505 1.02255 1.22617 0.92722 0.90461 1.00907 1.60149 1.27286 1.04645 1.25463 1.23696 1.00507 0.90056 0.94302 1.22968 0.90200 0.98861 0.92963 1.47424 1.29030 1.29748 1.14420 1.22092 0.99813 1.05939 0.89490 1.22321 1.01903 0.95953 0.95885 1.70403 1.15862 1.27377 1.05133 1.22634 0.95633 0.90027 0.89054 0.93140 0.96674 0.97000 0.91877 0.92328 0.89641 0.94561 0.87300 0.88063 0.88526 0.89137 0.81307 0.80651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -15.28 9.11 -34.44 -0.31 -15.59 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 9 C 0.02 0.67 4.97 -27.88 -0.14 0.53 16 10 C -0.11 -2.46 5.18 -26.73 -0.14 -2.60 16 11 C 0.06 1.05 4.73 -3.82 -0.02 1.03 16 12 N -0.45 -7.28 5.11 -172.38 -0.88 -8.17 16 13 C 0.04 0.43 7.08 -2.32 -0.02 0.42 16 14 C 0.07 0.72 7.98 -2.80 -0.02 0.70 16 15 N -0.52 -7.29 3.76 -115.79 -0.44 -7.72 16 16 C -0.04 -0.56 12.05 -16.38 -0.20 -0.75 16 17 C -0.01 -0.18 11.84 -17.86 -0.21 -0.40 16 18 N -0.47 -9.04 10.68 -13.71 -0.15 -9.19 16 19 C 0.38 6.68 7.12 -318.19 -2.27 4.42 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 1.55 7.02 -51.93 -0.36 1.18 16 24 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.09 1.36 7.89 -51.93 -0.41 0.95 16 26 H 0.04 0.65 8.06 -51.92 -0.42 0.24 16 27 H 0.11 0.86 7.63 -51.93 -0.40 0.47 16 28 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.18 2.10 8.06 -52.48 -0.42 1.67 16 LS Contribution 270.84 15.07 4.08 4.08 Total: -1.00 -35.30 270.84 -9.60 -44.89 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -4.51 Total: -3.65 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.42 Total: -10.72 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.73 Total: -52.08 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.30 -9.60 -44.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931525944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.823 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds