Wall clock time and date at job start Sun Mar 29 2020 22:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40081 * 126.03487 * 2 1 4 4 C 1.30835 * 108.20127 * 180.22737 * 3 2 1 5 5 C 1.39869 * 108.20720 * 359.77500 * 4 3 2 6 6 C 1.34943 * 126.03568 * 179.83578 * 2 1 3 7 7 C 1.50698 * 126.13003 * 0.03977 * 6 2 1 8 8 H 1.09004 * 109.86989 * 25.73020 * 7 6 2 9 9 C 1.54325 * 109.88481 * 264.71516 * 7 6 2 10 10 C 1.55154 * 102.94303 * 218.23458 * 9 7 6 11 11 C 1.54908 * 101.58289 * 35.49976 * 10 9 7 12 12 N 1.47290 * 110.00326 * 146.79030 * 7 6 2 13 13 C 1.36938 * 125.79079 * 298.43075 * 12 7 6 14 14 H 1.07995 * 120.00281 * 0.02562 * 13 12 7 15 15 C 1.38810 * 119.99650 * 180.02562 * 13 12 7 16 16 N 1.31621 * 120.00025 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00113 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47190 * 89.99819 * 17 15 13 19 19 H 1.48500 * 109.47472 * 210.00112 * 17 15 13 20 20 H 1.48507 * 109.46699 * 329.99987 * 17 15 13 21 21 H 1.08996 * 109.47985 * 270.16144 * 1 2 3 22 22 H 1.09008 * 109.47183 * 30.16380 * 1 2 3 23 23 H 1.09007 * 109.46869 * 150.15917 * 1 2 3 24 24 H 1.08009 * 125.89850 * 179.74348 * 4 3 2 25 25 H 1.07995 * 126.04162 * 180.02562 * 5 4 3 26 26 H 1.09002 * 110.72180 * 99.86694 * 9 7 6 27 27 H 1.08997 * 110.72163 * 336.59901 * 9 7 6 28 28 H 1.09008 * 111.00345 * 277.42446 * 10 9 7 29 29 H 1.09000 * 111.03743 * 153.59413 * 10 9 7 30 30 H 1.09002 * 110.36632 * 81.83114 * 11 10 9 31 31 H 1.08995 * 110.36781 * 204.04351 * 11 10 9 32 32 H 0.97001 * 119.99611 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0049 5 6 3.5437 -0.6666 -0.0030 6 6 2.2589 -1.0912 0.0031 7 6 1.7974 -2.5258 0.0064 8 1 0.8050 -2.5967 -0.4390 9 6 1.7630 -3.0628 1.4528 10 6 2.2651 -4.5222 1.2936 11 6 3.3153 -4.3685 0.1652 12 7 2.7458 -3.3619 -0.7491 13 6 3.0490 -3.2282 -2.0778 14 1 2.5757 -2.4549 -2.6645 15 6 3.9647 -4.0868 -2.6704 16 7 4.5411 -5.0296 -1.9554 17 14 4.3789 -3.9041 -4.4827 18 1 5.5263 -2.9740 -4.6369 19 1 4.7383 -5.2309 -5.0446 20 1 3.2014 -3.3621 -5.2073 21 1 -0.3635 0.0029 1.0276 22 1 -0.3634 0.8886 -0.5164 23 1 -0.3633 -0.8915 -0.5114 24 1 4.4054 1.3710 -0.0102 25 1 4.4211 -1.2963 -0.0056 26 1 0.7468 -3.0454 1.8467 27 1 2.4355 -2.4913 2.0925 28 1 1.4546 -5.1829 0.9857 29 1 2.7290 -4.8789 2.2132 30 1 4.2626 -4.0169 0.5740 31 1 3.4556 -5.3164 -0.3542 32 1 5.1813 -5.6293 -2.3695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932271316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:02 Heat of formation + Delta-G solvation = 106.393328 kcal Electronic energy + Delta-G solvation = -15452.607900 eV Core-core repulsion = 13029.879441 eV Total energy + Delta-G solvation = -2422.728459 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57480 -37.26976 -32.87787 -32.47539 -30.35309 -29.13161 -26.76893 -26.19806 -24.53242 -21.09998 -20.34471 -20.19011 -18.70947 -16.90961 -16.19657 -15.03137 -14.89504 -14.24289 -13.85989 -13.61187 -13.05330 -12.57744 -12.13395 -12.02700 -11.98215 -11.79256 -11.46060 -11.03922 -10.84561 -10.77871 -10.19598 -10.08034 -9.91687 -9.80519 -9.55956 -8.72800 -8.59989 -7.75316 -6.92205 -5.68591 -3.11356 2.53414 3.09102 3.39985 3.45379 3.46406 3.57687 4.46475 5.00652 5.22085 5.38125 5.42014 5.50881 5.56515 5.62466 5.65582 5.78000 5.93353 6.10349 6.29113 6.41288 6.50119 6.60068 6.65739 6.78802 7.10141 7.37347 7.50927 7.60842 7.69750 7.82977 8.31254 8.36006 9.18293 9.77498 10.40417 11.34626 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.011322 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.533670 B = 2472.370201 C = 3072.077071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.383 5.383 3 N -0.324 5.324 4 C 0.036 3.964 5 C -0.247 4.247 6 C 0.092 3.908 7 C 0.216 3.784 8 H 0.043 0.957 9 C -0.118 4.118 10 C -0.146 4.146 11 C 0.150 3.850 12 N -0.580 5.580 13 C -0.217 4.217 14 H 0.074 0.926 15 C -0.006 4.006 16 N -0.920 5.920 17 Si 0.913 3.087 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.282 1.282 21 H 0.066 0.934 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.173 0.827 25 H 0.144 0.856 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.014 0.986 31 H 0.110 0.890 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 4.477 5.843 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.167 5.167 3 N -0.146 5.146 4 C -0.149 4.149 5 C -0.276 4.276 6 C -0.037 4.037 7 C 0.105 3.895 8 H 0.061 0.939 9 C -0.157 4.157 10 C -0.184 4.184 11 C 0.025 3.975 12 N -0.303 5.303 13 C -0.346 4.346 14 H 0.092 0.908 15 C -0.202 4.202 16 N -0.567 5.567 17 Si 0.744 3.256 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.208 1.208 21 H 0.085 0.915 22 H 0.099 0.901 23 H 0.102 0.898 24 H 0.190 0.810 25 H 0.162 0.838 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.032 0.968 31 H 0.127 0.873 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.686 5.355 5.649 10.262 hybrid contribution 0.903 -0.346 -0.997 1.388 sum -5.784 5.009 4.653 8.955 Atomic orbital electron populations 1.21687 0.75658 1.03842 1.02452 1.48420 1.05877 1.03777 1.58597 1.77143 1.01891 1.08634 1.26937 1.23720 0.94870 0.95539 1.00748 1.21156 0.97179 0.93723 1.15553 1.22585 0.91510 0.91244 0.98356 1.19627 0.93951 0.83542 0.92337 0.93922 1.22532 1.00307 0.97616 0.95224 1.23015 1.00549 0.94759 1.00109 1.22018 0.91150 0.96311 0.87978 1.44625 1.47558 1.32268 1.05818 1.18982 1.19835 1.12668 0.83072 0.90790 1.24742 0.98938 0.98174 0.98307 1.69801 1.31918 1.20853 1.34177 0.86091 0.78285 0.76868 0.84375 1.21521 1.21628 1.20767 0.91548 0.90136 0.89777 0.80956 0.83817 0.92147 0.91596 0.92083 0.92155 0.96756 0.87259 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.43 11.27 59.85 0.67 2.11 16 2 N -0.38 -7.14 4.01 -63.88 -0.26 -7.39 16 3 N -0.32 -6.33 12.58 30.63 0.39 -5.95 16 4 C 0.04 0.69 12.02 -17.37 -0.21 0.48 16 5 C -0.25 -5.22 10.17 -40.01 -0.41 -5.62 16 6 C 0.09 1.89 5.59 -82.27 -0.46 1.43 16 7 C 0.22 4.42 3.36 -67.96 -0.23 4.19 16 8 H 0.04 0.86 6.99 -51.93 -0.36 0.49 16 9 C -0.12 -2.05 6.47 -24.90 -0.16 -2.21 16 10 C -0.15 -2.66 7.08 -24.58 -0.17 -2.84 16 11 C 0.15 3.51 5.89 -2.53 -0.01 3.50 16 12 N -0.58 -14.24 2.81 -163.68 -0.46 -14.70 16 13 C -0.22 -5.92 9.84 -15.06 -0.15 -6.07 16 14 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 15 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 16 N -0.92 -26.09 10.09 55.49 0.56 -25.53 16 17 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 23 H 0.08 1.06 7.00 -51.92 -0.36 0.69 16 24 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 25 H 0.14 3.26 8.06 -52.49 -0.42 2.83 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.15 7.84 -51.93 -0.41 0.74 16 28 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 2.88 5.86 -51.93 -0.30 2.57 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 266.35 15.07 4.01 4.01 Total: -1.00 -30.68 266.35 -6.37 -37.05 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.37 Total: 0.74 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.22 Total: -5.30 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.23 Total: -53.57 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.68 -6.37 -37.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932271316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.441 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds