Wall clock time and date at job start Sun Mar 29 2020 22:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40081 * 126.03487 * 2 1 4 4 C 1.30835 * 108.20127 * 180.22737 * 3 2 1 5 5 C 1.39869 * 108.20720 * 359.77500 * 4 3 2 6 6 C 1.34943 * 126.03568 * 179.83578 * 2 1 3 7 7 C 1.50698 * 126.13003 * 0.03977 * 6 2 1 8 8 H 1.09004 * 109.86989 * 25.73020 * 7 6 2 9 9 C 1.54325 * 109.88481 * 264.71516 * 7 6 2 10 10 C 1.55154 * 102.94303 * 218.23458 * 9 7 6 11 11 C 1.54908 * 101.58289 * 35.49976 * 10 9 7 12 12 N 1.47290 * 110.00326 * 146.79030 * 7 6 2 13 13 C 1.36938 * 125.79079 * 298.43075 * 12 7 6 14 14 H 1.07995 * 120.00281 * 0.02562 * 13 12 7 15 15 C 1.38810 * 119.99650 * 180.02562 * 13 12 7 16 16 N 1.31621 * 120.00025 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00113 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47190 * 89.99819 * 17 15 13 19 19 H 1.48500 * 109.47472 * 210.00112 * 17 15 13 20 20 H 1.48507 * 109.46699 * 329.99987 * 17 15 13 21 21 H 1.08996 * 109.47985 * 270.16144 * 1 2 3 22 22 H 1.09008 * 109.47183 * 30.16380 * 1 2 3 23 23 H 1.09007 * 109.46869 * 150.15917 * 1 2 3 24 24 H 1.08009 * 125.89850 * 179.74348 * 4 3 2 25 25 H 1.07995 * 126.04162 * 180.02562 * 5 4 3 26 26 H 1.09002 * 110.72180 * 99.86694 * 9 7 6 27 27 H 1.08997 * 110.72163 * 336.59901 * 9 7 6 28 28 H 1.09008 * 111.00345 * 277.42446 * 10 9 7 29 29 H 1.09000 * 111.03743 * 153.59413 * 10 9 7 30 30 H 1.09002 * 110.36632 * 81.83114 * 11 10 9 31 31 H 1.08995 * 110.36781 * 204.04351 * 11 10 9 32 32 H 0.97001 * 119.99611 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0049 5 6 3.5437 -0.6666 -0.0030 6 6 2.2589 -1.0912 0.0031 7 6 1.7974 -2.5258 0.0064 8 1 0.8050 -2.5967 -0.4390 9 6 1.7630 -3.0628 1.4528 10 6 2.2651 -4.5222 1.2936 11 6 3.3153 -4.3685 0.1652 12 7 2.7458 -3.3619 -0.7491 13 6 3.0490 -3.2282 -2.0778 14 1 2.5757 -2.4549 -2.6645 15 6 3.9647 -4.0868 -2.6704 16 7 4.5411 -5.0296 -1.9554 17 14 4.3789 -3.9041 -4.4827 18 1 5.5263 -2.9740 -4.6369 19 1 4.7383 -5.2309 -5.0446 20 1 3.2014 -3.3621 -5.2073 21 1 -0.3635 0.0029 1.0276 22 1 -0.3634 0.8886 -0.5164 23 1 -0.3633 -0.8915 -0.5114 24 1 4.4054 1.3710 -0.0102 25 1 4.4211 -1.2963 -0.0056 26 1 0.7468 -3.0454 1.8467 27 1 2.4355 -2.4913 2.0925 28 1 1.4546 -5.1829 0.9857 29 1 2.7290 -4.8789 2.2132 30 1 4.2626 -4.0169 0.5740 31 1 3.4556 -5.3164 -0.3542 32 1 5.1813 -5.6293 -2.3695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932271316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:01 Heat of formation + Delta-G solvation = 87.466597 kcal Electronic energy + Delta-G solvation = -15453.428625 eV Core-core repulsion = 13029.879441 eV Total energy + Delta-G solvation = -2423.549184 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.07911 -38.95215 -34.64000 -34.01952 -31.93978 -30.97644 -28.38463 -27.46509 -26.48190 -22.74939 -21.86901 -21.79401 -20.30499 -18.77304 -17.74704 -16.94477 -16.25123 -15.86769 -15.65951 -15.06411 -14.53573 -14.05933 -13.79177 -13.61898 -13.43623 -13.16865 -13.12138 -12.93303 -12.72786 -12.32103 -12.03581 -11.86382 -11.54085 -11.44421 -11.34968 -10.74098 -10.06796 -9.33577 -8.87710 -7.76055 -5.20283 1.02289 1.44856 1.46803 1.54361 1.75965 2.01253 2.49207 3.32185 3.65812 3.81351 3.84057 4.04496 4.21600 4.33934 4.41757 4.46465 4.55909 4.67970 4.86157 4.89840 4.96908 5.08730 5.19456 5.26383 5.49106 5.55567 5.71170 5.84836 5.85715 6.22532 6.34785 6.85138 7.12524 7.77888 8.40501 9.24787 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.011322 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.533670 B = 2472.370201 C = 3072.077071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.381 5.381 3 N -0.333 5.333 4 C 0.038 3.962 5 C -0.275 4.275 6 C 0.087 3.913 7 C 0.211 3.789 8 H 0.054 0.946 9 C -0.106 4.106 10 C -0.131 4.131 11 C 0.150 3.850 12 N -0.598 5.598 13 C -0.221 4.221 14 H 0.066 0.934 15 C -0.058 4.058 16 N -0.943 5.943 17 Si 0.969 3.031 18 H -0.292 1.292 19 H -0.290 1.290 20 H -0.274 1.274 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.203 0.797 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.085 0.915 30 H -0.015 1.015 31 H 0.077 0.923 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.706 5.358 6.530 11.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 N -0.155 5.155 4 C -0.147 4.147 5 C -0.305 4.305 6 C -0.044 4.044 7 C 0.101 3.899 8 H 0.072 0.928 9 C -0.144 4.144 10 C -0.169 4.169 11 C 0.026 3.974 12 N -0.321 5.321 13 C -0.350 4.350 14 H 0.084 0.916 15 C -0.251 4.251 16 N -0.592 5.592 17 Si 0.798 3.202 18 H -0.219 1.219 19 H -0.216 1.216 20 H -0.199 1.199 21 H 0.112 0.888 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.220 0.780 25 H 0.135 0.865 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.003 0.997 31 H 0.095 0.905 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.537 6.264 6.353 12.349 hybrid contribution 1.416 -0.569 -1.187 1.934 sum -7.121 5.695 5.166 10.480 Atomic orbital electron populations 1.22114 0.72731 1.05134 1.04692 1.48745 1.07513 1.02784 1.57385 1.77107 1.02120 1.09159 1.27159 1.24126 0.95808 0.94876 0.99860 1.21095 0.96892 0.94776 1.17714 1.22427 0.91706 0.91754 0.98481 1.19858 0.93050 0.83085 0.93865 0.92832 1.22521 1.02607 0.96153 0.93138 1.22879 0.99154 0.95971 0.98901 1.21814 0.91940 0.94425 0.89238 1.44787 1.48176 1.33643 1.05479 1.19115 1.19386 1.11896 0.84594 0.91598 1.25434 0.99469 0.98421 1.01746 1.70029 1.32432 1.21526 1.35236 0.85216 0.77914 0.76501 0.80535 1.21894 1.21617 1.19919 0.88782 0.88670 0.88759 0.78027 0.86545 0.88070 0.91813 0.91002 0.89685 0.99682 0.90502 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.21 11.27 127.77 1.44 3.65 16 2 N -0.38 -13.32 4.01 -356.01 -1.43 -14.74 16 3 N -0.33 -12.37 12.58 -57.02 -0.72 -13.09 16 4 C 0.04 1.39 12.02 85.24 1.02 2.41 16 5 C -0.28 -11.65 10.17 21.99 0.22 -11.43 16 6 C 0.09 3.45 5.59 41.41 0.23 3.68 16 7 C 0.21 8.29 3.36 44.54 0.15 8.44 16 8 H 0.05 2.01 6.99 -2.38 -0.02 1.99 16 9 C -0.11 -3.36 6.47 31.78 0.21 -3.15 16 10 C -0.13 -4.51 7.08 31.98 0.23 -4.28 16 11 C 0.15 7.17 5.89 86.85 0.51 7.68 16 12 N -0.60 -29.54 2.81 -671.75 -1.89 -31.43 16 13 C -0.22 -12.19 9.84 84.03 0.83 -11.37 16 14 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 15 C -0.06 -3.25 5.49 84.86 0.47 -2.78 16 16 N -0.94 -55.15 10.09 21.65 0.22 -54.93 16 17 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 18 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 23 H 0.09 2.04 7.00 -2.38 -0.02 2.03 16 24 H 0.20 5.83 8.06 -2.91 -0.02 5.81 16 25 H 0.12 5.52 8.06 -2.91 -0.02 5.49 16 26 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 28 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.08 4.18 5.86 -2.39 -0.01 4.16 16 32 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -67.19 266.35 4.62 -62.57 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.10 Total: 10.66 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 5.31 Total: -7.15 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.81 Total: -114.19 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -67.19 4.62 -62.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932271316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.038 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds