Wall clock time and date at job start Sun Mar 29 2020 22:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40076 * 126.03744 * 2 1 4 4 C 1.30838 * 108.20478 * 179.97438 * 3 2 1 5 5 C 1.39866 * 108.20506 * 0.02562 * 4 3 2 6 6 C 1.34946 * 126.03594 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.12893 * 0.04836 * 6 2 1 8 8 H 1.08998 * 109.87076 * 334.09798 * 7 6 2 9 9 C 1.54327 * 109.88309 * 95.27237 * 7 6 2 10 10 C 1.55154 * 102.94180 * 141.61173 * 9 7 6 11 11 C 1.54913 * 101.58295 * 324.49533 * 10 9 7 12 12 N 1.47018 * 109.88253 * 213.07985 * 7 6 2 13 13 C 1.36940 * 125.64439 * 61.68234 * 12 7 6 14 14 H 1.08002 * 120.00369 * 359.97438 * 13 12 7 15 15 C 1.38815 * 119.99486 * 180.02562 * 13 12 7 16 16 N 1.31619 * 120.00504 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99719 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47023 * 59.99661 * 17 15 13 19 19 H 1.48495 * 109.46926 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47123 * 299.99764 * 17 15 13 21 21 H 1.08995 * 109.47070 * 264.81718 * 1 2 3 22 22 H 1.09001 * 109.46510 * 24.82064 * 1 2 3 23 23 H 1.09000 * 109.46641 * 144.81489 * 1 2 3 24 24 H 1.08002 * 125.89494 * 179.97438 * 4 3 2 25 25 H 1.07997 * 126.04117 * 180.25846 * 5 4 3 26 26 H 1.08998 * 110.71863 * 259.97695 * 9 7 6 27 27 H 1.09005 * 110.72049 * 23.25070 * 9 7 6 28 28 H 1.08999 * 111.00220 * 206.42717 * 10 9 7 29 29 H 1.08999 * 111.00686 * 82.57744 * 10 9 7 30 30 H 1.08987 * 110.36993 * 278.17490 * 11 10 9 31 31 H 1.09002 * 110.45977 * 155.89364 * 11 10 9 32 32 H 0.96996 * 120.00510 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0006 5 6 3.5438 -0.6666 0.0003 6 6 2.2589 -1.0912 0.0005 7 6 1.7974 -2.5258 0.0001 8 1 0.8058 -2.5961 0.4472 9 6 1.7645 -3.0663 -1.4451 10 6 2.2703 -4.5240 -1.2825 11 6 3.3200 -4.3651 -0.1544 12 7 2.7465 -3.3567 0.7553 13 6 3.0473 -3.2174 2.0840 14 1 2.5705 -2.4436 2.6674 15 6 3.9658 -4.0702 2.6807 16 7 4.5472 -5.0129 1.9696 17 14 4.3767 -3.8798 4.4930 18 1 3.1438 -4.0580 5.3014 19 1 5.3770 -4.9053 4.8840 20 1 4.9354 -2.5253 4.7342 21 1 -0.3633 -0.0928 1.0234 22 1 -0.3632 0.9328 -0.4314 23 1 -0.3632 -0.8399 -0.5922 24 1 4.4054 1.3710 0.0003 25 1 4.4211 -1.2963 0.0046 26 1 0.7483 -3.0523 -1.8390 27 1 2.4357 -2.4944 -2.0860 28 1 2.7354 -4.8809 -2.2014 29 1 1.4615 -5.1860 -0.9732 30 1 4.2664 -4.0120 -0.5638 31 1 3.4630 -5.3105 0.3689 32 1 5.1888 -5.6090 2.3866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932271317.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:06 Heat of formation + Delta-G solvation = 106.184675 kcal Electronic energy + Delta-G solvation = -15456.785523 eV Core-core repulsion = 13034.048016 eV Total energy + Delta-G solvation = -2422.737507 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57153 -37.28531 -32.87448 -32.46688 -30.35642 -29.12964 -26.76958 -26.19685 -24.52684 -21.07890 -20.34046 -20.19711 -18.72116 -16.91003 -16.17904 -15.04600 -14.86233 -14.24334 -13.87067 -13.58540 -13.04521 -12.58856 -12.13129 -12.03566 -11.99057 -11.79163 -11.46247 -11.04189 -10.83602 -10.77025 -10.19667 -10.09606 -9.92343 -9.80265 -9.56122 -8.72370 -8.58377 -7.75173 -6.91988 -5.68223 -3.11046 2.53606 3.09618 3.40717 3.44947 3.46440 3.58138 4.47111 5.00033 5.22395 5.40345 5.44036 5.49773 5.57506 5.62954 5.65441 5.77436 5.93938 6.11221 6.28699 6.40718 6.50299 6.60115 6.65626 6.79054 7.10891 7.37709 7.51049 7.61081 7.70257 7.83191 8.31759 8.36428 9.18736 9.78146 10.40650 11.34988 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025645 B = 0.011346 C = 0.009128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.559976 B = 2467.192517 C = 3066.851617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.383 5.383 3 N -0.324 5.324 4 C 0.036 3.964 5 C -0.247 4.247 6 C 0.092 3.908 7 C 0.217 3.783 8 H 0.043 0.957 9 C -0.119 4.119 10 C -0.146 4.146 11 C 0.150 3.850 12 N -0.579 5.579 13 C -0.219 4.219 14 H 0.074 0.926 15 C -0.005 4.005 16 N -0.920 5.920 17 Si 0.913 3.087 18 H -0.285 1.285 19 H -0.289 1.289 20 H -0.285 1.285 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.173 0.827 25 H 0.144 0.856 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.015 0.985 31 H 0.110 0.890 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 4.446 -6.000 9.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.167 5.167 3 N -0.146 5.146 4 C -0.149 4.149 5 C -0.276 4.276 6 C -0.037 4.037 7 C 0.106 3.894 8 H 0.061 0.939 9 C -0.157 4.157 10 C -0.184 4.184 11 C 0.026 3.974 12 N -0.302 5.302 13 C -0.347 4.347 14 H 0.091 0.909 15 C -0.201 4.201 16 N -0.568 5.568 17 Si 0.743 3.257 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.211 1.211 21 H 0.086 0.914 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.190 0.810 25 H 0.162 0.838 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.128 0.872 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.636 5.322 -5.810 10.302 hybrid contribution 0.884 -0.344 1.036 1.405 sum -5.752 4.978 -4.775 8.981 Atomic orbital electron populations 1.21668 0.75659 1.03519 1.02704 1.48422 1.05869 1.03785 1.58658 1.77139 1.01897 1.08637 1.26916 1.23717 0.94865 0.95542 1.00772 1.21156 0.97189 0.93723 1.15506 1.22620 0.91504 0.91256 0.98318 1.19573 0.93988 0.83551 0.92299 0.93928 1.22544 1.00274 0.97644 0.95278 1.23015 1.00542 0.94765 1.00109 1.22023 0.91134 0.96238 0.88025 1.44555 1.47319 1.32481 1.05871 1.18940 1.19729 1.12863 0.83146 0.90854 1.24740 0.98864 0.98200 0.98296 1.69783 1.31702 1.21012 1.34276 0.86173 0.77794 0.77239 0.84444 1.21193 1.21518 1.21129 0.91437 0.89979 0.90115 0.80970 0.83823 0.92182 0.91571 0.92158 0.92075 0.96745 0.87247 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.45 10.98 59.85 0.66 2.10 16 2 N -0.38 -7.16 4.01 -63.88 -0.26 -7.41 16 3 N -0.32 -6.34 12.58 30.62 0.39 -5.95 16 4 C 0.04 0.68 12.03 -17.37 -0.21 0.47 16 5 C -0.25 -5.22 10.17 -40.01 -0.41 -5.63 16 6 C 0.09 1.89 5.57 -82.26 -0.46 1.43 16 7 C 0.22 4.44 3.22 -68.10 -0.22 4.22 16 8 H 0.04 0.86 7.68 -51.93 -0.40 0.46 16 9 C -0.12 -2.05 6.47 -24.90 -0.16 -2.22 16 10 C -0.15 -2.66 7.08 -24.58 -0.17 -2.84 16 11 C 0.15 3.52 5.89 -2.53 -0.01 3.51 16 12 N -0.58 -14.26 2.80 -163.88 -0.46 -14.71 16 13 C -0.22 -5.97 9.82 -15.06 -0.15 -6.11 16 14 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 15 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 16 N -0.92 -26.10 10.09 55.49 0.56 -25.54 16 17 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.08 0.94 7.83 -51.93 -0.41 0.53 16 24 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 25 H 0.14 3.26 8.06 -52.49 -0.42 2.84 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.15 7.84 -51.93 -0.41 0.75 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.01 0.36 8.14 -51.94 -0.42 -0.06 16 31 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 267.39 15.07 4.03 4.03 Total: -1.00 -30.71 267.39 -6.44 -37.15 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.45 Total: 0.66 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.23 Total: -5.30 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.23 Total: -53.63 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.71 -6.44 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932271317.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.335 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds